Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B03
         (255 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    24   2.8  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    24   3.7  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    23   6.4  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    23   8.5  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    23   8.5  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 2.8
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 186 VGSHDNIILR-LDTVTKLFLYS 124
           +GS  +IILR  D++T L LYS
Sbjct: 175 LGSRQDIILREKDSITNLILYS 196


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 213 WKPFYVRLYVGSHDNI 166
           WKPFY+R  V   D I
Sbjct: 59  WKPFYLRSVVNIPDRI 74


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 23.0 bits (47), Expect = 6.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 62  SIIFTVEYQSALSIGTML*KLE*RNNFVTVSSRKIM 169
           ++IF   Y+   S  +ML +LE +++ +    +KIM
Sbjct: 221 TVIFPENYEDGPSFRSMLHELEQKSSLMKYYCKKIM 256


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -1

Query: 237 RTVGSRRFWKPFYVRLYVGSHDNI 166
           R +  R FW  F +  Y  SH+++
Sbjct: 554 RELRRRTFWSCFLMDRYASSHEHL 577


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 189 YVGSHDNIILRLDTVTKLFLY 127
           YV +HDNII+      K+  Y
Sbjct: 352 YVSTHDNIIIHQKCPLKIIEY 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,463
Number of Sequences: 5004
Number of extensions: 18007
Number of successful extensions: 42
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 49493712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)