Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B03
         (255 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0189 + 2097918-2098191,2101711-2102747                           27   1.6  
12_02_0842 - 23588826-23589198,23589548-23590203                       26   3.6  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    26   3.6  

>10_01_0189 + 2097918-2098191,2101711-2102747
          Length = 436

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -1

Query: 213 WKPFYVRLYVGSHDNIILRLDTVTKLFLYSNF*SIVPI-LKAL*YSTVKIIDNSMTYSLN 37
           WK FY  +   S +N ++ L T+ KL     F ++ P+ L  L Y   + +  ++ +   
Sbjct: 220 WKKFYSHVTNLSRENKVIILTTIEKL---ERFGTVKPMTLNRLVYEEYRYLFKTLAFGST 276

Query: 36  DAIKFYKIAP 7
           D +   ++ P
Sbjct: 277 DPVDHPQLIP 286


>12_02_0842 - 23588826-23589198,23589548-23590203
          Length = 342

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 70  LHRGVSKCFKYWNDALEVGVKK 135
           LHR    C + W + L  G+KK
Sbjct: 43  LHRDAKSCLERWKNYLRPGIKK 64


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 190 VCWES**HNFTT*YCHKVISLLQLLK 113
           +CW+S   NFT  +CH     LQL +
Sbjct: 721 LCWDS--RNFTCSHCHSADEYLQLCR 744


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,102,352
Number of Sequences: 37544
Number of extensions: 94793
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 63
effective length of database: 12,428,076
effective search space used: 260989596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)