Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B03
         (255 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical pr...    26   4.3  
Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical pr...    26   4.3  
AF098504-4|AAC67411.1|  339|Caenorhabditis elegans Hypothetical ...    26   4.3  
Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z54327-9|CAA91122.2|  839|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical ...    25   7.4  
AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical ...    25   7.4  
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with...    25   9.8  
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with...    25   9.8  
U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine rece...    25   9.8  
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi...    25   9.8  

>Z81096-7|CAB03163.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 159  VKLCYHDSQHTILHK 203
            +K+C  D QH +LHK
Sbjct: 1060 LKICIRDCQHAVLHK 1074


>Z81028-6|CAB02695.2| 2769|Caenorhabditis elegans Hypothetical protein
            B0365.7 protein.
          Length = 2769

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 159  VKLCYHDSQHTILHK 203
            +K+C  D QH +LHK
Sbjct: 1060 LKICIRDCQHAVLHK 1074


>AF098504-4|AAC67411.1|  339|Caenorhabditis elegans Hypothetical
           protein T27C10.3 protein.
          Length = 339

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 123 WSKEITL*QYQVVKLCYHDSQ---HTILHKMVSRIVWNQQ 233
           W+ +  + + Q+V+ C+HD+      + H   +RI+ NQQ
Sbjct: 286 WTHQKKMREEQLVRTCFHDNNPRLPKVNHVYRTRIIPNQQ 325


>Z74043-7|CAA98539.2|  705|Caenorhabditis elegans Hypothetical
           protein T19B10.5 protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +1

Query: 100 YWNDALEVGVKK*LCDSIKS*NYVIMTPNIQSYIKWFPESSGTNSASTLE 249
           Y NDA +V  K   CD+ KS N   MT      +K   E SGT  A ++E
Sbjct: 180 YANDACDVEDKG--CDAPKSINKDKMTMIDSFKLKRKMEDSGTQKAYSME 227


>Z54327-9|CAA91122.2|  839|Caenorhabditis elegans Hypothetical
           protein C26D10.4 protein.
          Length = 839

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 150 YQVVKLCYHDSQHTILHKMVS 212
           Y+ +K CY++  H I+H  ++
Sbjct: 660 YEGIKKCYYERNHGIVHSPIT 680


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
           protein K10C2.1 protein.
          Length = 2314

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 137 NFVTVSSRKIMLS*LPTYNLT*NGFQNRLEPTVRQHLKN 253
           N  TVS +  + +    +N T  G QN+  PT+  +LK+
Sbjct: 463 NLATVSYQMTLTTPRQQWNFTRAGTQNKYIPTLAGYLKS 501


>AC024214-5|AAF36077.2|  605|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7a protein.
          Length = 605

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 229 WFQTILETILCKIVCW 182
           W+ + +E  +CK VCW
Sbjct: 265 WYYSNMENRICKKVCW 280


>AC024214-4|AAM97985.2|  603|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7b protein.
          Length = 603

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 229 WFQTILETILCKIVCW 182
           W+ + +E  +CK VCW
Sbjct: 263 WYYSNMENRICKKVCW 278


>AC024214-3|AAU05554.1|  577|Caenorhabditis elegans Hypothetical
           protein Y77E11A.7c protein.
          Length = 577

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 229 WFQTILETILCKIVCW 182
           W+ + +E  +CK VCW
Sbjct: 237 WYYSNMENRICKKVCW 252


>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform a
           protein.
          Length = 2322

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 183 QHTILHKMVSRIVWNQQCVN 242
           ++T++H+ V  + WN +CVN
Sbjct: 596 RNTVIHQSV--LTWNNECVN 613


>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
           morphological effecton genitalia protein 1, isoform b
           protein.
          Length = 2019

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 183 QHTILHKMVSRIVWNQQCVN 242
           ++T++H+ V  + WN +CVN
Sbjct: 596 RNTVIHQSV--LTWNNECVN 613


>U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein51 protein.
          Length = 348

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 179 VMIT*FYDLILSQSYFFTPTSKASFQYLKHFDTP 78
           +++T FY ++ +  +FF    + S  +L+ F  P
Sbjct: 77  LLLTIFYSILTTPVHFFPAQVRCSNGFLRQFGVP 110


>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
           nonsense-mediated mRNA decay proteinSMG-1 protein.
          Length = 2322

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 183 QHTILHKMVSRIVWNQQCVN 242
           ++T++H+ V  + WN +CVN
Sbjct: 596 RNTVIHQSV--LTWNNECVN 613


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,681,293
Number of Sequences: 27780
Number of extensions: 96387
Number of successful extensions: 197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 230791218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)