Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B02
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    28   0.84 
SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   7.8  
SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.8  

>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 294 NEILSRYLNAFALTHSN--TFLLRFFF*NQDTRYFYYFKRSFKEMTAGCW 151
           N+IL+ Y ++  + +    + ++RF   +Q  R  Y  K    E+T GCW
Sbjct: 156 NQILALYTHSQPILYDRDGSLIVRFSKGDQYIRNMYNTKGHIAEITDGCW 205


>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -2

Query: 207 TRYFYYFKRSF-KEMTAGC-WNF----PSNLCGISKFIYL 106
           T  FYY +    KE + G  W++    P+++CG+SK  Y+
Sbjct: 153 TPNFYYVQEDILKEFSNGKKWDYTIAMPNDICGVSKGSYM 192


>SPAC683.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -1

Query: 259 INSF*YLSIAIFFLKSRYEIFLLFQTVL*GNDGWLLELSIEFMWHLKIHIPRSISNI 89
           I  F Y S+ +F L   Y I   F+++    +G      +    H K H+PRS+++I
Sbjct: 49  ITKFVYCSMRLFSL---YTIVQYFKSLRCLRNG---RTEVRLYTHYKRHLPRSVNSI 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,807,965
Number of Sequences: 5004
Number of extensions: 33486
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)