Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B02
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical ...    29   1.3  
AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical...    27   7.0  
Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AF038609-6|AAK29795.1|  245|Caenorhabditis elegans Hypothetical
           protein C54E4.1 protein.
          Length = 245

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -2

Query: 399 QLTQ*RTKRGRSRGHSTS*TYNIFSSGHFKARGKINEILS 280
           QLTQ R    RS G STS T  +   G    +G   E+L+
Sbjct: 116 QLTQRRATSFRSNGSSTSSTLTVNGEGRKSRKGSTTELLT 155


>AL132948-21|CAC51051.2|  453|Caenorhabditis elegans Hypothetical
           protein Y39B6A.29 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 339 YNIFSSGHFKARGKINEILSRYLNAFALTHSNTFLLRFFF*NQDTRYFYYFKR 181
           Y I+  G   +   +NEI ++Y+   +     +F L FFF N    Y+YYF +
Sbjct: 62  YIIYMIGCLFSPSILNEIGAKYILICSAICFASFPLGFFFVNS---YYYYFSQ 111


>Z80789-1|CAB02551.1|  708|Caenorhabditis elegans Hypothetical
           protein F48C11.2 protein.
          Length = 708

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 137 IYVASQNSYTSVYF*HTKTISHKTPPKLT 51
           +Y+     + SVY  HTK I H  P K T
Sbjct: 362 VYITVPEKHESVYGFHTKEIIHVMPEKPT 390


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,891,802
Number of Sequences: 27780
Number of extensions: 180442
Number of successful extensions: 312
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)