Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B01
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 31 0.036
SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit L51... 27 0.58
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 26 1.8
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 2.3
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy... 25 4.1
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ... 24 5.4
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 24 5.4
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 7.1
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 23 9.4
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 23 9.4
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 31.5 bits (68), Expect = 0.036
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +2
Query: 71 LKMPFMKGRAPIRRTLNYLNAGRLVLKDKIKIFSIAYNIT-GENNTGAKEFIFWNLPQLQ 247
++ PF+ RAP R+T +YL + V KD +A T +T +F +L Q
Sbjct: 1 MRNPFLTFRAPTRKTGDYL-VSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRS 59
Query: 248 FKN 256
F++
Sbjct: 60 FQS 62
>SPBC19C2.12 |mrpl51||mitochondrial ribosomal protein subunit
L51|Schizosaccharomyces pombe|chr 2|||Manual
Length = 145
Score = 27.5 bits (58), Expect = 0.58
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 191 GENNTGAKEFIFWNLPQLQFKNPNVQIVTLKNLTPSPFIRCYFEDGK 331
G ++ G KEF+ L L ++ +V+ P IR Y+ G+
Sbjct: 34 GGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGR 80
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 1.8
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 203 TGAKEFIFWNLPQLQFKNPN 262
+G+K+F+ WN P + K+P+
Sbjct: 511 SGSKKFVMWNPPYVDPKHPD 530
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 128 NAGRLVLKDKIKIFSIAYNI 187
N G LV ++++K+ SIAY I
Sbjct: 252 NVGALVCENEVKMLSIAYEI 271
>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 146 LKDKIKIFSIAYNITGENNTGAKEFIFWNLPQLQFKNPNVQIVTLKNLTPSPFI 307
+KD + F++ Y+ G ++ NLPQ+ KNP+ Q N S F+
Sbjct: 51 VKDPVDFFAV-YD--GHGGDKVAKWCGSNLPQILEKNPDFQKGDFVNALKSSFL 101
>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 24.2 bits (50), Expect = 5.4
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = -1
Query: 106 YGSSSFHKRHFELKYICL-PFQNINRLYEIYSPRAE 2
+GS SF+ + FE + CL P +N ++ P E
Sbjct: 272 HGSHSFNGKQFETSFNCLTPSENTVNDPQVLDPEDE 307
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 273 TICTLGFLNCNCGKFQNINS 214
T+C G NC C F+++NS
Sbjct: 709 TMCFGGDDNCGCQVFEDVNS 728
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 23.8 bits (49), Expect = 7.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +1
Query: 79 AFYERKSSHKTYIKLFECGKISFKR*NQDLFNRLQHNRRKQYRGKRIYILE 231
A YER+ S + + K S + DLF LQH+ +YR Y LE
Sbjct: 676 ALYERRISIGKIVLTLQNFKKSENPRDLDLFACLQHSLFDEYRFFPDYPLE 726
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 23.4 bits (48), Expect = 9.4
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Frame = +2
Query: 89 KGRAPIRRTLNYLNAGRLVLKDKIK-IFSIAYNITGENNTGAKE 217
KGR R L LN L +KD +K I Y E N E
Sbjct: 166 KGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHE 209
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 192 EKTIPGQKNLYFGIYHNCSLK 254
++TI Q NLY ++HN +K
Sbjct: 83 DETIEIQDNLYTSVFHNGLMK 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,426,607
Number of Sequences: 5004
Number of extensions: 28193
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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