Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B01
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042     29   0.93 
08_02_1223 - 25381462-25381575,25381822-25382061,25382570-253827...    28   2.2  
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919...    27   5.0  
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024     26   6.6  
03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723           26   6.6  
04_03_0025 - 9630220-9630783,9630957-9631355,9632039-9632177,963...    26   8.7  

>02_04_0140 - 20156655-20156834,20157139-20159345,20159970-20160042
          Length = 819

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
 Frame = +2

Query: 68  QLKMPFMKGRAPIRRTLNYLNAGRL--VLKDKIKIFSIAYNITGENNTGAKEFI 223
           +LK+P  K RAPI R  +    G +  + +++ + F  AY +T + +  ++E+I
Sbjct: 486 RLKLPDFKIRAPILRQASEAYTGMIFQLFQEEYEEFQSAYIVTRDESGPSREYI 539


>08_02_1223 -
           25381462-25381575,25381822-25382061,25382570-25382707,
           25383397-25383849,25384528-25385010
          Length = 475

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 1   LRHEENRFRTDDLYFETVGIYTSTQNAFYERKSSHKTY 114
           L H+ N F + D Y + +GIY S        K S+  Y
Sbjct: 432 LLHDHNEFLSKDEYLKGIGIYESIIRTLATLKDSNVDY 469


>03_02_0668 -
           10290541-10290644,10290777-10290911,10291812-10291905,
           10291994-10292089,10292458-10292639,10293578-10293658,
           10293746-10293875,10293996-10294181,10294567-10294692
          Length = 377

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 16  NRFRTDDLYFETVGIYTSTQNAF 84
           NR   DD+ F+ +GI  S  NAF
Sbjct: 75  NRLTEDDMEFDMIGIDASMANAF 97


>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
          Length = 143

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 71  LKMPFMKGRAPIRRTLNYLNAGRLVLKDKIKI 166
           LK PF +   PIR  L  LN  +++ KD++ +
Sbjct: 109 LKNPFYEMEMPIRCELFDLNLAQVIQKDRVTL 140


>03_02_0093 - 5581087-5581259,5581956-5582062,5582644-5582723
          Length = 119

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 191 GENNTGAKEFIFWNLPQLQFKNPNVQIVT 277
           G ++ G + F+  +LP  + KNP++++VT
Sbjct: 20  GGSSRGIRAFMEAHLPAFKEKNPHLEVVT 48


>04_03_0025 -
           9630220-9630783,9630957-9631355,9632039-9632177,
           9632532-9632766,9632971-9633478
          Length = 614

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +2

Query: 194 ENNTGAKEFIFWNLPQLQFKNPNVQIVTLKNLTPSPFIR 310
           E  T   +  +W +P   F   N ++  L  LTP+  +R
Sbjct: 280 EKETAMTKIRYWRMPTSCFGETNRRVKFLSFLTPTELVR 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,131,981
Number of Sequences: 37544
Number of extensions: 143060
Number of successful extensions: 243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)