Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_B01
(337 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024826-16|AAF60793.1| 170|Caenorhabditis elegans Hypothetical... 85 9e-18
Z70271-5|CAA94233.2| 443|Caenorhabditis elegans Hypothetical pr... 27 2.5
AF031477-1|AAC15586.1| 443|Caenorhabditis elegans delta6-fatty-... 27 2.5
Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical pr... 26 5.8
Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical pr... 26 5.8
AF040641-5|AAB94944.1| 379|Caenorhabditis elegans Hypothetical ... 26 5.8
AC024776-4|AAK68465.2| 155|Caenorhabditis elegans Hypothetical ... 26 5.8
Z73909-2|CAD36493.1| 921|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z73906-15|CAD36486.1| 921|Caenorhabditis elegans Hypothetical p... 26 7.7
Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical p... 26 7.7
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p... 26 7.7
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 26 7.7
AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein. 26 7.7
>AC024826-16|AAF60793.1| 170|Caenorhabditis elegans Hypothetical
protein Y55F3AM.1 protein.
Length = 170
Score = 85.4 bits (202), Expect = 9e-18
Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +2
Query: 77 MPFMKGRAPIRRTLNYLNAGRLVLKDKIKIFSIAY--NITGENNTGAKEFIFWNLPQLQF 250
MPFM G P+RRT YL G++ L+D + +FS+ + N T E + GA++F++WN QLQ+
Sbjct: 1 MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQS-GARDFVYWNWAQLQY 59
Query: 251 KNPNVQIVTLKNLTPSPFIRCYFEDGKNI 337
NP VQ+V + +PF R Y DG+ +
Sbjct: 60 HNPKVQLVKHADKVVTPFARAYLNDGREV 88
>Z70271-5|CAA94233.2| 443|Caenorhabditis elegans Hypothetical
protein W08D2.4 protein.
Length = 443
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 263 VQIVTLKNLTPSPFI 307
+QI+T +N+TPSPFI
Sbjct: 359 LQILTTRNMTPSPFI 373
>AF031477-1|AAC15586.1| 443|Caenorhabditis elegans
delta6-fatty-acid-desaturase protein.
Length = 443
Score = 27.5 bits (58), Expect = 2.5
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 263 VQIVTLKNLTPSPFI 307
+QI+T +N+TPSPFI
Sbjct: 359 LQILTTRNMTPSPFI 373
>Z99284-2|CAL49452.1| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 107 RRTLNYLNAGRLVLKDKIKIFSIAYNITGENNTGAKEFI 223
+ T++YL R L I I +AYN+ +N T E++
Sbjct: 135 QETIDYLTTKRDQLDVIIHIGDLAYNLHDQNGTTGDEYM 173
>Z92796-7|CAB63230.2| 546|Caenorhabditis elegans Hypothetical
protein H25K10.1 protein.
Length = 546
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 107 RRTLNYLNAGRLVLKDKIKIFSIAYNITGENNTGAKEFI 223
+ T++YL R L I I +AYN+ +N T E++
Sbjct: 135 QETIDYLTTKRDQLDVIIHIGDLAYNLHDQNGTTGDEYM 173
>AF040641-5|AAB94944.1| 379|Caenorhabditis elegans Hypothetical
protein D1069.4 protein.
Length = 379
Score = 26.2 bits (55), Expect = 5.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -1
Query: 70 LKYICLPFQNINRLYEIYSPRAE 2
L +CLP ++++YEI SP E
Sbjct: 162 LSIVCLPTLVLHKIYEIESPEIE 184
>AC024776-4|AAK68465.2| 155|Caenorhabditis elegans Hypothetical
protein Y41D4B.15 protein.
Length = 155
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 113 TLNYLNAGRLVLKDKIKIFSIAYNITG-ENNTGAKEFIFWNLPQLQFKNPN 262
TL +LN + ++ + ++ ++G E + + I+WN P +K+P+
Sbjct: 48 TLVFLNQDLKMQNSQLYVPEMSSRVSGLETSATSSVSIYWNTPTENYKDPD 98
>Z73909-2|CAD36493.1| 921|Caenorhabditis elegans Hypothetical
protein D2030.10b protein.
Length = 921
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 276 VTICTLGFLNCNCGKFQNINSFAPVLFSPVML*AIEKILILSFKTN 139
+ +C +N C QNIN++A LFS M EK L TN
Sbjct: 543 LVVCAASVVNIMC---QNINAYARKLFSEAMRNHEEKASRLVRATN 585
>Z73909-1|CAA98133.2| 1009|Caenorhabditis elegans Hypothetical
protein D2030.10a protein.
Length = 1009
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 276 VTICTLGFLNCNCGKFQNINSFAPVLFSPVML*AIEKILILSFKTN 139
+ +C +N C QNIN++A LFS M EK L TN
Sbjct: 543 LVVCAASVVNIMC---QNINAYARKLFSEAMRNHEEKASRLVRATN 585
>Z73907-2|CAA98125.2| 1009|Caenorhabditis elegans Hypothetical
protein D2030.10a protein.
Length = 1009
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 276 VTICTLGFLNCNCGKFQNINSFAPVLFSPVML*AIEKILILSFKTN 139
+ +C +N C QNIN++A LFS M EK L TN
Sbjct: 543 LVVCAASVVNIMC---QNINAYARKLFSEAMRNHEEKASRLVRATN 585
>Z73906-15|CAD36486.1| 921|Caenorhabditis elegans Hypothetical
protein D2030.10b protein.
Length = 921
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 276 VTICTLGFLNCNCGKFQNINSFAPVLFSPVML*AIEKILILSFKTN 139
+ +C +N C QNIN++A LFS M EK L TN
Sbjct: 543 LVVCAASVVNIMC---QNINAYARKLFSEAMRNHEEKASRLVRATN 585
>Z73906-14|CAA98122.2| 1009|Caenorhabditis elegans Hypothetical
protein D2030.10a protein.
Length = 1009
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 276 VTICTLGFLNCNCGKFQNINSFAPVLFSPVML*AIEKILILSFKTN 139
+ +C +N C QNIN++A LFS M EK L TN
Sbjct: 543 LVVCAASVVNIMC---QNINAYARKLFSEAMRNHEEKASRLVRATN 585
>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
protein 68 protein.
Length = 5079
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 188 TGENNTGAKEFIFWNLPQLQFKN 256
T N+ AKE++ +PQLQ KN
Sbjct: 1728 TAARNSMAKEYVIPLVPQLQIKN 1750
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 188 TGENNTGAKEFIFWNLPQLQFKN 256
T N+ AKE++ +PQLQ KN
Sbjct: 1849 TAARNSMAKEYVIPLVPQLQIKN 1871
>AF324832-1|AAL82897.1| 1009|Caenorhabditis elegans AEX-1 protein.
Length = 1009
Score = 25.8 bits (54), Expect = 7.7
Identities = 17/46 (36%), Positives = 22/46 (47%)
Frame = -2
Query: 276 VTICTLGFLNCNCGKFQNINSFAPVLFSPVML*AIEKILILSFKTN 139
+ +C +N C QNIN++A LFS M EK L TN
Sbjct: 543 LVVCAASVVNIMC---QNINAYARKLFSEAMRNHEEKASRLVRATN 585
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,665,072
Number of Sequences: 27780
Number of extensions: 147710
Number of successful extensions: 372
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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