Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_B01
         (337 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    27   0.061
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   3.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   5.3  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   7.0  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 27.1 bits (57), Expect = 0.061
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = +1

Query: 4   RHEENRFRTDDLYFETVGIYTSTQNAFYERKSSHKTYIKLFECGKISFKR*NQDLFNRLQ 183
           R     +R  D  +E +    + +  F E ++SHK Y +  E  + S+K  N+  + + +
Sbjct: 239 RDRNREYRKKDRQYEKLH---NEKEKFLEERTSHKRYSRSREREQKSYK--NEREYRKYR 293

Query: 184 HNRRKQYRGKR 216
              ++++R +R
Sbjct: 294 ETSKERFRDRR 304


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 190 GYVVSD*KDLDFIF 149
           GY +SD KD+D IF
Sbjct: 81  GYDISDFKDVDPIF 94


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +1

Query: 70  TQNAFYERKSSHK-TYI--KLFECGK 138
           TQN +Y   SSH   Y+  K F  GK
Sbjct: 259 TQNLYYSAMSSHNLNYVNTKQFTQGK 284


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 71  LKMPFMKGRAPIRRTLNYLNAGRLVLKDKIKIFSIAYNITGENNTGAKEFI 223
           +K+P  K  A I    +++      +KD+  I S A  I  E     +E +
Sbjct: 820 IKVPSTKVLAMISSVKSFMELSLRSVKDRETIISAAEKIAEELKIVPEELV 870


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,111
Number of Sequences: 438
Number of extensions: 1685
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)