Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A24
         (391 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC004286-1|AAH04286.1|  673|Homo sapiens INT1 protein protein.         29   7.1  
AY358482-1|AAQ88846.1| 1029|Homo sapiens HILV1821 protein.             29   7.1  
AB037861-1|BAA92678.1| 1377|Homo sapiens KIAA1440 protein protein.     29   7.1  
BC117238-1|AAI17239.1|  676|Homo sapiens LIM domains containing ...    28   9.3  
BC117236-1|AAI17237.1|  676|Homo sapiens LIM domains containing ...    28   9.3  
AJ312686-1|CAC35917.1|  503|Homo sapiens LIM domains containing ...    28   9.3  
AJ132408-1|CAB63652.1|  676|Homo sapiens LIM domains containing ...    28   9.3  

>BC004286-1|AAH04286.1|  673|Homo sapiens INT1 protein protein.
          Length = 673

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -2

Query: 189 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 13
           Q L+QN  ++    H  +    RG   G  +H L     PP   +    +    P  PI
Sbjct: 416 QTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPI 474


>AY358482-1|AAQ88846.1| 1029|Homo sapiens HILV1821 protein.
          Length = 1029

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -2

Query: 189 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 13
           Q L+QN  ++    H  +    RG   G  +H L     PP   +    +    P  PI
Sbjct: 113 QTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPI 171


>AB037861-1|BAA92678.1| 1377|Homo sapiens KIAA1440 protein protein.
          Length = 1377

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 15/59 (25%), Positives = 22/59 (37%)
 Frame = -2

Query: 189 QVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPGPPI 13
           Q L+QN  ++    H  +    RG   G  +H L     PP   +    +    P  PI
Sbjct: 461 QTLEQNIMDKNYMAHLVEVQHERGASGGQTFHSLLTASLPPRRDSTEAPKPKSSPEQPI 519


>BC117238-1|AAI17239.1|  676|Homo sapiens LIM domains containing 1
           protein.
          Length = 676

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 84  VVQSPPADRAVRLSREPLEPGPPIQPS 4
           V+   P+   VRL  +PL PGP ++PS
Sbjct: 417 VLLDSPSSPRVRLPCQPLVPGPELRPS 443


>BC117236-1|AAI17237.1|  676|Homo sapiens LIM domains containing 1
           protein.
          Length = 676

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 84  VVQSPPADRAVRLSREPLEPGPPIQPS 4
           V+   P+   VRL  +PL PGP ++PS
Sbjct: 417 VLLDSPSSPRVRLPCQPLVPGPELRPS 443


>AJ312686-1|CAC35917.1|  503|Homo sapiens LIM domains containing 1
           protein.
          Length = 503

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 84  VVQSPPADRAVRLSREPLEPGPPIQPS 4
           V+   P+   VRL  +PL PGP ++PS
Sbjct: 417 VLLDSPSSPRVRLPCQPLVPGPELRPS 443


>AJ132408-1|CAB63652.1|  676|Homo sapiens LIM domains containing
           protein 1 protein.
          Length = 676

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 84  VVQSPPADRAVRLSREPLEPGPPIQPS 4
           V+   P+   VRL  +PL PGP ++PS
Sbjct: 417 VLLDSPSSPRVRLPCQPLVPGPELRPS 443


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,693,076
Number of Sequences: 237096
Number of extensions: 892629
Number of successful extensions: 2607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2607
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2698607930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)