Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A23
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.76 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.00 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   3.0  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   3.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   7.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 448  TSSASCNLAGAVPELAPAYYLVEDSLK 368
            +S +SCN     P+  P  YL+EDS+K
Sbjct: 966  SSESSCN-----PDQKPTEYLLEDSMK 987


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 197  SISNKKSRIMWIVLSMSLIPGVKTAVKVAAVDISGG 304
            +++++  RI W+   +S   GV T  KV  +   GG
Sbjct: 1092 TLTSQTIRISWMSPPLSAANGVITGYKVIVIPSGGG 1127


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 481 KLEQYVDITDEHGLTALHWAGSYGQLNSCQDLVWCG 588
           +LEQ  + T  HGL  LH  G +G  +S      CG
Sbjct: 124 RLEQLTNQTGLHGLHGLH--GLHGLSSSAPTGSSCG 157


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 233 LSTLSCFSCLISILFPSCFTDTV 165
           L+ + CFS L+S ++   F DT+
Sbjct: 132 LNFIICFSKLLSDMYEDTFEDTL 154


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +1

Query: 190 KSIDIKQEKQDNVDSFK 240
           +SI++ QEK++NV++ K
Sbjct: 3   RSINMDQEKKNNVENLK 19


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -3

Query: 167 VSSILLY-AQ*KQIYL*NLSALIYSIHNVLCDRLHYG 60
           +S ++ Y +Q +++Y  N++++   I N++C  L  G
Sbjct: 222 LSRLVRYVSQWEEVYFLNMASVFMRIFNLICMMLLIG 258


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 224 LSCFSCLISILFPSCFTDTVSSILLY 147
           +S F C  +I    C T T +S LL+
Sbjct: 65  ISFFGCCGAIRESHCMTITFASFLLF 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,515
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)