Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A18
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   179   3e-46
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    38   0.002
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    29   0.60 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   5.6  
SPBC2F12.11c |rep2||transcriptional activator Rep2|Schizosacchar...    25   7.4  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   9.7  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  179 bits (436), Expect = 3e-46
 Identities = 89/150 (59%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
 Frame = +1

Query: 205 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 384
           LF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF +TLDK 
Sbjct: 26  LFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLDKN 85

Query: 385 TAKGLFKILEKYRPETAAVRKERLKKAAEANV-AKKDEPPPKRPNTLRAGTNTVTKLVEK 561
           TA  +FK+L KYRPETAA +K+RL   AEA    K  +   K+P  ++ G N V  L+E 
Sbjct: 86  TATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALIEA 145

Query: 562 KKAQLVVIAHDVDPIELVLFLPALWRTMGV 651
           KKA+LV+IA DVDPIELV+FLPAL + MGV
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGV 175


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +1

Query: 520 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPAL 633
           LR G N  TK + +  ++ +V+A D +PIE++L LP L
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLL 69


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 400 FKILEKYRPETAAVRKERLKKAAEA-NVAKKDEPPPKRPNTLRAGTNTVTK 549
           F+  E+YR  + +++K    K  EA N   +   PP +   +R G N  ++
Sbjct: 430 FQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPSKRRRVRGGNNATSR 480


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 313 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 414
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 326 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 424
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPBC2F12.11c |rep2||transcriptional activator
           Rep2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 332 VSKCRRQSTSSPRH*IKPQPK-VCSRSW-RNTGQKLRQSGKSV*RKPPKPMLLRKMSRHR 505
           +++  RQ T  P+   + Q K + +R   R+  Q+ R++  S  R   K  L R+M R R
Sbjct: 103 IAQLIRQQTDPPQIIHRKQDKGLMARVLSRSKKQEERENHSSDARDAIKSALRRRM-RRR 161

Query: 506 KGQTPYALEPT 538
           +G+   AL PT
Sbjct: 162 EGRVQKALRPT 172


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +1

Query: 385 TAKGLFKILEKYR 423
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,648,727
Number of Sequences: 5004
Number of extensions: 51366
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)