Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A17
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    25   0.55 
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.0  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 68  QCEFYPRAEFLSPG 27
           +CE Y + EFL+PG
Sbjct: 61  KCEIYAKCEFLNPG 74


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -3

Query: 378 LLFLLIYYYSCTYYPMFIQQNVRTTAPCPLSHT 280
           +LFL +YYY  + +  +  + V    P P   T
Sbjct: 13  VLFLALYYYLTSTFDFWKSRGVVGPKPVPFFGT 45


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 470 IITRYFNCKYSSSAVNLIRTLFCVVF 547
           +I  YFNC     A +++ T+  ++F
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 470 IITRYFNCKYSSSAVNLIRTLFCVVF 547
           +I  YFNC     A +++ T+  ++F
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIF 281


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 470 IITRYFNCKYSSSAVNLIRTLFCVVF 547
           +I  YFNC     A +++ T+  ++F
Sbjct: 256 LIGSYFNCIMFMVASSVVLTVLVLIF 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,771
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)