Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A16
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr 2...    28   0.33 
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   2.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   3.0  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    24   5.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    24   7.0  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    23   9.2  

>SPBC1815.01 |eno101|eno1|enolase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 28.3 bits (60), Expect = 0.33
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 307 VISRHLYRSRNNPTCNNHWTLKPG*HRA 224
           V +R +Y SR NPT     T + G HRA
Sbjct: 6   VFARQIYDSRGNPTVEVDLTTETGIHRA 33


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 187 PKHNTNLPDNKFKLYVNQVLMSN 255
           P  NTN   N  K+Y NQ+   N
Sbjct: 158 PHTNTNANSNNLKVYANQLSQQN 180


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 78  YIMKKSLSTSE--AFHAYVRNYSKCFKRVF 161
           YI  +S+  SE   FH  +  +S+C KR+F
Sbjct: 712 YICSESVWGSELRCFHCSISCHSRCLKRLF 741


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 175 YNMVPKHNTNLPDNKFKLYVNQVLMSNGYYRLDYYV 282
           Y+ +   N N+     KL V+QV  +  Y  L Y++
Sbjct: 366 YSDLRDRNANISARSIKLVVSQVFTAANYEYLVYWI 401


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = +3

Query: 120 AYVRNYSKCFKRVFFL 167
           A +RNY++CF+++  L
Sbjct: 153 AELRNYTRCFRQIILL 168


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +3

Query: 81  IMKKSLSTSEAFHAYVRNYSKCFKRVF 161
           I+K     S   H Y RNY   F RVF
Sbjct: 517 ILKGPNVESSLGHTYDRNYEFSFDRVF 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,446
Number of Sequences: 5004
Number of extensions: 25512
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)