Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A16
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.0  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   3.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   3.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   3.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   3.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    20   9.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    20   9.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    20   9.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    20   9.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   9.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   9.1  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -1

Query: 327 SGSTGRVSFPD 295
           SGSTG+V+F D
Sbjct: 341 SGSTGKVAFDD 351


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 319 HREGVISRHLYRSRNNPTCNNH 254
           HREG+  RH Y  +  P    H
Sbjct: 48  HREGLGRRHRYNFQLKPYNPEH 69


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 175 YNMVPKHNTNLPDNKFKLYVN 237
           YN    +N N  +N  KLY N
Sbjct: 334 YNNYNNYNNNYNNNYKKLYYN 354


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 319 HREGVISRHLYRSRNNPTCNNH 254
           HREG+  RH Y  +  P    H
Sbjct: 49  HREGLGRRHRYNFQLKPYNPEH 70


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 53   ISRNKLYDLYYEKIIIYE 106
            +SRNK Y    E  II+E
Sbjct: 1538 VSRNKAYQKVEENEIIFE 1555


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 196 NTNLPDNKFKLYVNQVLMSNGYYRLDYY 279
           + N   + +  Y N    +N Y +L YY
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 196 NTNLPDNKFKLYVNQVLMSNGYYRLDYY 279
           + N   + +  Y N    +N Y +L YY
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 196 NTNLPDNKFKLYVNQVLMSNGYYRLDYY 279
           + N   + +  Y N    +N Y +L YY
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +1

Query: 196 NTNLPDNKFKLYVNQVLMSNGYYRLDYY 279
           + N   + +  Y N    +N Y +L YY
Sbjct: 86  SNNYKYSNYNNYNNNNYNNNNYKKLQYY 113


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 307 VISRHLYRSRNNPTCN 260
           +ISR+++RS     CN
Sbjct: 348 IISRYVFRSALEDYCN 363


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -3

Query: 268 TCNNHWTLK 242
           +CNN+W  K
Sbjct: 100 SCNNYWNTK 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,724
Number of Sequences: 438
Number of extensions: 1998
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)