Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A11
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.12 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    25   0.47 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    25   0.47 
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   1.4  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   1.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   1.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   3.3  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              22   3.3  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   5.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   7.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +1

Query: 109 PDRQLH----THPDQQLRTHPDQQLRTYPDRQLHTHPDQQLRTHPDQQ 240
           P +QLH    THP  Q +  P QQ      +Q    P QQ +    QQ
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQ-----QQQQQQQPQQQQQQQQQQQ 852



 Score = 25.0 bits (52), Expect = 0.36
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
 Frame = +1

Query: 181 PDRQLH----THPDQQLRTHPDQQLRTHPDRQLHTHPDQKLRTHPDQQ 312
           P +QLH    THP  Q +  P QQ      +Q    P Q+ +    QQ
Sbjct: 810 PHQQLHHHQSTHPQAQAQAQPQQQ-----QQQQQQQPQQQQQQQQQQQ 852



 Score = 24.2 bits (50), Expect = 0.63
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 112  DRQLHTHPDQQLRTHPDQQLRTYPDRQLHTHPDQQLRTHPDQQLRTHPD-RQLHTHPDQK 288
            +R++H    Q+ R    + L + P +       QQ +    QQL  +PD   L+  P  K
Sbjct: 1426 EREVHNGGQQEDRDR--KTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDK 1483



 Score = 24.2 bits (50), Expect = 0.63
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
 Frame = +1

Query: 97   LYTHPDRQLHTHPDQQLRTHPDQQLRTYPD-RQLHTHPDQQLRTHPDQQLRTHPDRQLHT 273
            L + P +       QQ +    QQL  YPD   L+  P  +      + +  H  ++   
Sbjct: 1443 LTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACDSKLIVDHSSQKTQQ 1502

Query: 274  HPDQKLRTHPDQQ 312
               Q+ +    QQ
Sbjct: 1503 QQPQQQQQQQQQQ 1515



 Score = 23.8 bits (49), Expect = 0.83
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +3

Query: 114  PTAAYASGPTIAHASG-PTTAHVSGPTAAYASGPTTAHASGPTTAHASGPT 263
            P+   AS P  +  +G PT+A  +   A  AS P     + P  +  S PT
Sbjct: 885  PSYKPASTPGCSSKNGEPTSAAFAQGFATAASSPGLLERASPAFSGTSSPT 935



 Score = 23.4 bits (48), Expect = 1.1
 Identities = 15/58 (25%), Positives = 21/58 (36%)
 Frame = +1

Query: 133 PDQQLRTHPDQQLRTYPDRQLHTHPDQQLRTHPDQQLRTHPDRQLHTHPDQKLRTHPD 306
           P QQL  H      T+P  Q    P QQ +    Q  +    +Q      +   T+ D
Sbjct: 810 PHQQLHHHQS----THPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGPMTNDD 863



 Score = 23.4 bits (48), Expect = 1.1
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +1

Query: 205 PDQQLRTHPDQQLRTHPDRQLHTHPDQKLRTHPDQQLRTHPDRQ 336
           P QQL  H      THP  Q    P Q+ +    Q  +    +Q
Sbjct: 810 PHQQLHHHQS----THPQAQAQAQPQQQQQQQQQQPQQQQQQQQ 849



 Score = 23.0 bits (47), Expect = 1.4
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 103 THPDRQLHTHPDQQLRTHPDQQLRTYPDRQLHTHPDQQ 216
           THP  Q    P QQ      QQ +  P +Q      QQ
Sbjct: 820 THPQAQAQAQPQQQ-----QQQQQQQPQQQQQQQQQQQ 852



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 13/53 (24%), Positives = 24/53 (45%)
 Frame = +1

Query: 172  RTYPDRQLHTHPDQQLRTHPDQQLRTHPDRQLHTHPDQKLRTHPDQQLRTHPD 330
            R+  +R++H    Q+ R    + L + P +       Q+ +    QQL  +PD
Sbjct: 1422 RSSREREVHNGGQQEDRDR--KTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPD 1472



 Score = 22.2 bits (45), Expect = 2.5
 Identities = 12/53 (22%), Positives = 21/53 (39%)
 Frame = +1

Query: 211  QQLRTHPDQQLRTHPDRQLHTHPDQKLRTHPDQQLRTHPDRQLHTHPDNSAFY 369
            ++   H   Q      + L + P Q  +    QQ +    +QL+ +PD    Y
Sbjct: 1425 REREVHNGGQQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLY 1477



 Score = 21.0 bits (42), Expect = 5.8
 Identities = 11/48 (22%), Positives = 20/48 (41%)
 Frame = +1

Query: 139  QQLRTHPDQQLRTYPDRQLHTHPDQQLRTHPDQQLRTHPDRQLHTHPD 282
            ++   H   Q      + L + P Q  +    QQ +    +QL+ +PD
Sbjct: 1425 REREVHNGGQQEDRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPD 1472


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 196 AAVGPDTCAVVGPDACAIVGPDAYAAVGPDA 104
           ++VGP +   + PD  +++ P  ++  GP++
Sbjct: 40  SSVGPQSPLDMKPDTASLINPGNFSPSGPNS 70



 Score = 24.2 bits (50), Expect = 0.63
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 268 AAVGPDACAVVGPDACAVVGPDAYAAVGPDT 176
           ++VGP +   + PD  +++ P  ++  GP++
Sbjct: 40  SSVGPQSPLDMKPDTASLINPGNFSPSGPNS 70



 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 214 VGPDAYAAVGPDTCAVVGPDACAIVGPDA 128
           VGP +   + PDT +++ P   +  GP++
Sbjct: 42  VGPQSPLDMKPDTASLINPGNFSPSGPNS 70


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.6 bits (51), Expect = 0.47
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 196 AAVGPDTCAVVGPDACAIVGPDAYAAVGPDA 104
           ++VGP +   + PD  +++ P  ++  GP++
Sbjct: 40  SSVGPQSPLDMKPDTASLINPGNFSPSGPNS 70



 Score = 24.2 bits (50), Expect = 0.63
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = -1

Query: 268 AAVGPDACAVVGPDACAVVGPDAYAAVGPDT 176
           ++VGP +   + PD  +++ P  ++  GP++
Sbjct: 40  SSVGPQSPLDMKPDTASLINPGNFSPSGPNS 70



 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 214 VGPDAYAAVGPDTCAVVGPDACAIVGPDA 128
           VGP +   + PDT +++ P   +  GP++
Sbjct: 42  VGPQSPLDMKPDTASLINPGNFSPSGPNS 70


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 215 CWSGCVCSCRSGYVRSCWSGCV 150
           C  GCVC  R GY+R+    CV
Sbjct: 67  CAPGCVC--RLGYLRNKKKVCV 86


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 215 CWSGCVCSCRSGYVRSCWSGCV 150
           C  GCVC  R GY+R+    CV
Sbjct: 67  CAPGCVC--RLGYLRNKKKVCV 86


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 248 RIRTDSCTRIRTKNCARIRTNNCARIRIDSCTRI 349
           +I+   CT+ +  +  RI  N C   R+  C  +
Sbjct: 49  KIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAV 82



 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 104 RIRTDSCIRIRTNNCARIRTNNCARIRTDSCIRI 205
           +I+   C + +  +  RI  N C   R   CI +
Sbjct: 49  KIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAV 82


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)
 Frame = +2

Query: 248 RIRTDSCTRIRTKNCARIRTNNCARIRIDSCTRI 349
           +I+   CT+ +  +  RI  N C   R+  C  +
Sbjct: 98  KIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAV 131



 Score = 21.0 bits (42), Expect = 5.8
 Identities = 9/34 (26%), Positives = 15/34 (44%)
 Frame = +2

Query: 104 RIRTDSCIRIRTNNCARIRTNNCARIRTDSCIRI 205
           +I+   C + +  +  RI  N C   R   CI +
Sbjct: 98  KIQYRPCTKNQQCSILRINRNRCQYCRLKKCIAV 131


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 177 VSGPTAAYASGPTTAHA 227
           V+ PTA Y++  T +HA
Sbjct: 182 VANPTANYSASTTLSHA 198



 Score = 21.4 bits (43), Expect = 4.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 108 SGPTAAYASGPTIAHA 155
           + PTA Y++  T++HA
Sbjct: 183 ANPTANYSASTTLSHA 198


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 4   RGIKKCIEALIDKQYLERAVGTLDTYS 84
           +GIK  +E LID+  +++ V    T S
Sbjct: 82  QGIKAVMELLIDENSVKQLVSDCSTIS 108


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 311 NCARIRIDSCTRI 349
           N  R+R+D+C R+
Sbjct: 111 NIIRVRVDACDRL 123


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 25  EALIDKQYLERAVGTLDTYSYLA*LYTHPDRQLHTHPDQQLRTHPDQQLRTYPDR 189
           + L D QY+     + D   YL  + +    +LH   D  +R +P ++   Y  R
Sbjct: 681 QLLKDSQYIREQTESDDKEGYLHSVVSGALDRLHYETDPCVRYYPRRKEWLYLHR 735


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 3   TRDQEMYRSAHRQAVPRASRRHTRHL 80
           T   +MY S   +  PR S +   H+
Sbjct: 142 TPSPQMYSSGGEEITPRQSHQSYHHM 167


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +2

Query: 101 TRIRTDSCIRIRTNNCARIRTNNCARIRTDSCIRIRTNNCARIRTNNCARIRTDSCTRIR 280
           +R  +DSC     +  A IR  N +  R +SC+       ++  T    +   +S + ++
Sbjct: 348 SRRHSDSCCLCLDSMNAVIRNFNESENRRNSCLGSTETYYSKHNTQQFTQYIPESSSNLQ 407

Query: 281 TK 286
            K
Sbjct: 408 EK 409


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,575
Number of Sequences: 438
Number of extensions: 3375
Number of successful extensions: 34
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)