Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A10
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...   231   3e-62
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...   231   3e-62
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...   231   3e-62
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||...   118   5e-28
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    28   0.66 
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   4.7  

>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score =  231 bits (566), Expect = 3e-62
 Identities = 113/125 (90%), Positives = 119/125 (95%)
 Frame = +2

Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALRQIRRYQKSTE 295
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALR+IRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 296 LLIRKLPFQRLVREIAQDFTTDLRFQSAAIGALQEASEAYLVGLFEDTNLGAIHAKRVTI 475
           LLIRKLPFQRLVREIAQDF TDLRFQS+AIGALQEA EAYLV LFEDTNL AIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 476 MPKDI 490
            PKD+
Sbjct: 121 QPKDM 125


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score =  231 bits (566), Expect = 3e-62
 Identities = 113/125 (90%), Positives = 119/125 (95%)
 Frame = +2

Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALRQIRRYQKSTE 295
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALR+IRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 296 LLIRKLPFQRLVREIAQDFTTDLRFQSAAIGALQEASEAYLVGLFEDTNLGAIHAKRVTI 475
           LLIRKLPFQRLVREIAQDF TDLRFQS+AIGALQEA EAYLV LFEDTNL AIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 476 MPKDI 490
            PKD+
Sbjct: 121 QPKDM 125


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score =  231 bits (566), Expect = 3e-62
 Identities = 113/125 (90%), Positives = 119/125 (95%)
 Frame = +2

Query: 116 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALRQIRRYQKSTE 295
           MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALR+IRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 296 LLIRKLPFQRLVREIAQDFTTDLRFQSAAIGALQEASEAYLVGLFEDTNLGAIHAKRVTI 475
           LLIRKLPFQRLVREIAQDF TDLRFQS+AIGALQEA EAYLV LFEDTNL AIH KRVTI
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAVEAYLVSLFEDTNLCAIHGKRVTI 120

Query: 476 MPKDI 490
            PKD+
Sbjct: 121 QPKDM 125


>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score =  118 bits (284), Expect = 5e-28
 Identities = 65/110 (59%), Positives = 85/110 (77%), Gaps = 10/110 (9%)
 Frame = +2

Query: 191 ARKSAPSTGG--VKKPH--RYRPGTVALRQIRRYQKSTELLIRKLPFQRLVREIAQD--- 349
           A+KS  +  G  + +P   RYRPGT ALR+IR+YQ+ST+LLI++LPF R+VREI+ +   
Sbjct: 2   AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVA 61

Query: 350 -FTTD--LRFQSAAIGALQEASEAYLVGLFEDTNLGAIHAKRVTIMPKDI 490
            F+TD  LR+QS A+  LQEA+EA+LV LFEDTNL AIHAKRVTIM +D+
Sbjct: 62  NFSTDVGLRWQSTALQCLQEAAEAFLVHLFEDTNLCAIHAKRVTIMQRDM 111


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +2

Query: 221 VKKPHRYRPGTVALRQ-IRRYQKSTELLIRKLPFQRLVREIAQ--DFTTDLRF---QSAA 382
           + + HR +    +L + + +++ S  LLI   P Q  +RE+A   DF    +F   +   
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEIN 566

Query: 383 IGALQEASEAYLVGLFE 433
           + A  E  EAY+  L E
Sbjct: 567 LEAPDEEQEAYIRSLQE 583


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 203 APSTGGVKKPHRY--RPGTVALRQIRRYQKSTELLIRKLP 316
           APS+G   + +    R    +LRQ+RR  ++TE++  +LP
Sbjct: 439 APSSGEANQLYTVCGRGSNSSLRQLRRGLETTEIVASELP 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,489
Number of Sequences: 5004
Number of extensions: 41814
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)