Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A10
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   1.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   1.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   9.4  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   9.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 128 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNNEHNDHML 12
           +++   T + F   L +     +G  NKF+NN + D ++
Sbjct: 279 VWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALI 317


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = -2

Query: 128 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNNEHNDHML 12
           +++   T + F   L +     +G  NKF+NN + D ++
Sbjct: 332 VWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALI 370


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 298 QLRRFLIATNLSKRYSTRAITM 233
           QL   L  + +S+ YSTRAI +
Sbjct: 291 QLEYDLQTSIMSRHYSTRAIVI 312


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +3

Query: 402 PVKPIWWVC 428
           PVKP  W+C
Sbjct: 231 PVKPCPWIC 239


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 319 PATRSRNCSRLYN 357
           P + S NC+++YN
Sbjct: 116 PTSGSDNCNKIYN 128


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 319 PATRSRNCSRLYN 357
           P + S NC+++YN
Sbjct: 116 PTSGSDNCNKIYN 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,146
Number of Sequences: 438
Number of extensions: 2777
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)