Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_A09
(314 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 29 0.22
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 28 0.29
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.29
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 25 2.7
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 25 2.7
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 3.6
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 3.6
SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase... 24 6.3
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 24 6.3
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 24 6.3
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 24 6.3
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 23 8.3
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 0.22
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 127 NPNLLSARPPFQEISGQGNINNYFRDHSERTNMQGHNINISQNQPS--PQTK 276
NPN LS P +S + + Y RD ER N + + PS P+TK
Sbjct: 89 NPNPLSHPLPTNALSDEHVMEKYIRDKYERKLFLDENHSTNSKPPSLPPRTK 140
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 28.3 bits (60), Expect = 0.29
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 112 APMPVNPNLLSARPPFQEISGQGNINNYFRDHSERTNMQGHNINISQNQPSPQ 270
+PM ++P A PP+ ++ G G+I++Y +S G + PSPQ
Sbjct: 225 SPMKLSPANQQAMPPYPQMLGPGSISSY--TNSNLGPSAGFRPPTFFSSPSPQ 275
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 28.3 bits (60), Expect = 0.29
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 115 PMPVNPNLLSARPPFQEISGQGNINNYFRDHSERT 219
P PV PN++S PP S G+ + ++ ++ T
Sbjct: 140 PPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYT 174
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.0 bits (52), Expect = 2.7
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 98 AIFYISGGTRNLFTNLGI-PFIMVIILI 18
A+ Y+S G F++LGI FIM+I+ I
Sbjct: 130 AVTYVSSGYYGSFSDLGIFRFIMLILQI 157
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 25.0 bits (52), Expect = 2.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 211 QNDL*NSYLCFLAQIF 164
QNDL N YL F+A I+
Sbjct: 2248 QNDLFNKYLSFIADIY 2263
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.6 bits (51), Expect = 3.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 175 QGNINNYFRDHSERTNMQGHNINISQNQPSPQT 273
QG++++Y S T + I+IS +PSPQ+
Sbjct: 300 QGDVSSYPLSRSVSTPVPMSPISISPAKPSPQS 332
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 3.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 118 MPVNPNLLSARPPFQEISGQGNINNYFRDHSERTNMQGHNINISQNQ 258
+ + P+ + P F+ I + +I F +H+E TNM +S N+
Sbjct: 142 LSLEPHQPVSLPAFENIGSETSIP--FENHNEITNMNTAKDKLSSNE 186
>SPBC32F12.11 |tdh1|gpd1|glyceraldehyde-3-phosphate dehydrogenase
Tdh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 336
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -1
Query: 170 DISWKGGLADNKLGFTGIGAARRRAIFYISGGTRNL 63
DI W AD + TG+ + A ++ GG + +
Sbjct: 84 DIKWSTSGADYVIESTGVFTTQETASAHLKGGAKRV 119
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 199 RDHSERTNMQGHNINISQNQPSPQTKWIE 285
R+ S T+ GH I++ P P IE
Sbjct: 12 REKSSSTSESGHPISLDSKTPPPNDSKIE 40
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 23.8 bits (49), Expect = 6.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 187 NNYFRDHSERTNMQGHNINISQNQPSPQTKWI 282
N+ F + S+ + H IN Q+ PSP + ++
Sbjct: 200 NHNFSNPSKSSKNGVHTINNMQSSPSPSSSFL 231
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 23.8 bits (49), Expect = 6.3
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 133 NLLSARP-PFQEISGQGNINNYFRDHSERTNMQ 228
N SAR Q ++G+ ++N+YF+D T Q
Sbjct: 495 NSQSARNYSLQYLNGRPDVNDYFKDFLHATGTQ 527
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 23.4 bits (48), Expect = 8.3
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +1
Query: 127 NPNLLSARPPFQEISGQGNINNYFRDHSERTN 222
N LLS P SGQ NN S+R N
Sbjct: 75 NGTLLSTSSPLISTSGQFTSNNVSTTSSQRHN 106
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,776
Number of Sequences: 5004
Number of extensions: 26100
Number of successful extensions: 66
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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