Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_A09
(314 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119... 30 0.33
06_01_0112 - 876213-876857,877245-877622,877707-877813,878271-87... 30 0.44
11_08_0018 + 27669238-27669489 28 1.8
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 27 3.1
07_01_0421 - 3215751-3216392,3216786-3217112,3217197-3217341,321... 27 4.1
01_06_1770 + 39782912-39783203,39783834-39783895,39783926-39784483 27 4.1
05_05_0038 - 21769936-21770199,21770785-21771198,21771274-217714... 26 5.4
10_01_0136 - 1639780-1639901,1640038-1640093,1641958-1642061,164... 26 7.1
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 26 7.1
07_03_1596 - 28012392-28012799 26 7.1
03_02_0343 - 7649210-7650154 26 7.1
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 26 7.1
08_01_0153 - 1200121-1200465,1201693-1202920,1204517-1204602,120... 25 9.4
03_05_0541 + 25381403-25382077,25382555-25383904,25386267-253864... 25 9.4
03_02_0536 - 9284079-9286034 25 9.4
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 25 9.4
>04_04_0555 -
26210346-26211458,26211530-26211719,26211826-26211960,
26212072-26212169,26212262-26212425,26213558-26214032
Length = 724
Score = 30.3 bits (65), Expect = 0.33
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +1
Query: 163 EISGQGNINNYFRDHSERTNMQGHNINISQNQPSPQTKWIEEPLFTPSII 312
+I+ G NY SER G N +QN +P WI LF S I
Sbjct: 154 DIAFSGGFGNYILSMSERIAGLGTEANNAQNIKNPHLGWIIGFLFLVSFI 203
>06_01_0112 -
876213-876857,877245-877622,877707-877813,878271-878319,
880413-880637,880741-880935
Length = 532
Score = 29.9 bits (64), Expect = 0.44
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +1
Query: 43 GMPKLVNKFLVPPDI*KMALLRAAPMPVNP-NLLSARPPFQEISGQGNIN-NYFRDHSER 216
G+ L K VP D + A P P P N L+AR +S G N+F +R
Sbjct: 219 GIVPLSGKSYVP-DENNSESVDAKPEPALPFNPLAARAATISLSAFGPFGFNFFNGKGKR 277
Query: 217 TNMQGHNINISQNQPS 264
N + +N+N S +PS
Sbjct: 278 QNKKLNNLNQSNKKPS 293
>11_08_0018 + 27669238-27669489
Length = 83
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 173 PDISWKGGLADNKLGFTGIGAARRRAIFYI 84
PDI W G D ++ GA+ R +YI
Sbjct: 54 PDIQWNAGADDQRMRHPASGASYRERKYYI 83
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 115 PMPVNPNLLSARPPFQEISGQGNINNYFRDHSERTNMQGHNIN 243
P+P +P+ L +PP E NI Y +++ MQ + +N
Sbjct: 1212 PVPSSPSSLGYQPPAPEYFRASNIQKYSWLNNKLILMQSNQLN 1254
>07_01_0421 -
3215751-3216392,3216786-3217112,3217197-3217341,
3218885-3218934
Length = 387
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +1
Query: 133 NLLSARPPFQEISGQGNIN-NYFRDHSERTNMQGHNINISQNQPS 264
N L+AR +S G N+F +R N + +N+N S +PS
Sbjct: 122 NPLAARAATISLSAFGPFGFNFFNGKGKRQNKKPNNLNQSNKKPS 166
>01_06_1770 + 39782912-39783203,39783834-39783895,39783926-39784483
Length = 303
Score = 26.6 bits (56), Expect = 4.1
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = -3
Query: 216 PFRMISKIVIYVSLPRYFLERRSSR*QIRVYRHWCCS*EGHFLYIRWH*KLVHQLGHSF 40
PF+ S +V + SLPRY RRS R R +H F YI + KLV+ G+++
Sbjct: 69 PFKRYS-LVFHKSLPRYSAGRRSLRWMRR--QHLPSPNIKDFGYIAENSKLVYVNGYAY 124
>05_05_0038 -
21769936-21770199,21770785-21771198,21771274-21771434,
21771544-21771607,21771682-21771864,21772355-21772520,
21773397-21773528,21775085-21775599
Length = 632
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 40 KGMPKLVNKFLVPPDI*KMALLRAAPMPVNP 132
KG ++V F PP + AL+ A P P+ P
Sbjct: 287 KGKRRVVGAFHAPPGRRRTALVAALPEPLQP 317
>10_01_0136 -
1639780-1639901,1640038-1640093,1641958-1642061,
1642119-1642301,1642963-1643073,1643175-1643330,
1644627-1644866,1646496-1646603,1646764-1647903
Length = 739
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -3
Query: 99 GHFLYIRWH*KLVHQLGHSFHNGHNT 22
GHFLY+ H L H FH+ T
Sbjct: 97 GHFLYMISHNASYEDLQHEFHHSGET 122
>08_02_0678 -
19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 220 NMQGHNINISQNQPSPQTKWIEEPLFTP 303
N QG N+N PSPQ + + L P
Sbjct: 591 NYQGGNLNYQYQPPSPQAHYQQGGLIRP 618
>07_03_1596 - 28012392-28012799
Length = 135
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 131 GFTGIGAARRRAIFYISGGTRN 66
G G G ARRR I I GGT +
Sbjct: 79 GTAGDGGARRRGITAIGGGTES 100
>03_02_0343 - 7649210-7650154
Length = 314
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 118 MPVNPNLLSARPPFQEISGQGN 183
MP +P L SA PPF + G G+
Sbjct: 181 MPGSPGLASAFPPFAQPIGHGS 202
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 202 DHSERTNMQGHNINISQNQPSPQTKWIEEPL 294
+H E T G + I ++Q P +WI+EP+
Sbjct: 198 NHGEITARDG-DATIQESQKRPGKRWIDEPV 227
>08_01_0153 -
1200121-1200465,1201693-1202920,1204517-1204602,
1205145-1205272,1205957-1205969
Length = 599
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 61 NKFLVPPDI*KMALLRAAPMPVNPNL 138
N FL PP + LR AP P P+L
Sbjct: 159 NGFLAPPVFEALPSLRDAPAPEKPSL 184
>03_05_0541 +
25381403-25382077,25382555-25383904,25386267-25386402,
25386642-25387126
Length = 881
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Frame = +1
Query: 154 PFQEISGQGNINNYFRDH--SERTNMQGHNINISQNQPSPQTKWIEEPLFTPSI 309
P EI G + H S+ +G+N+N++ + SPQ + L PS+
Sbjct: 660 PEGEIKSSGFASQIKESHELSQGNGNKGNNVNMASSTSSPQLVTVPVGLCLPSM 713
>03_02_0536 - 9284079-9286034
Length = 651
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 211 ERTNMQGHNINISQNQPSPQTKW 279
ER G N + S N PSP+ +W
Sbjct: 156 ERKQGSGSNASSSANGPSPRDRW 178
>02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 230 PCMFVRSE*SLK*LFMFPCPDISWKGG 150
PC +RS LK L ++ CPD+ + GG
Sbjct: 1336 PCNLLRS---LKRLCIYDCPDLEFCGG 1359
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,201,940
Number of Sequences: 37544
Number of extensions: 180045
Number of successful extensions: 360
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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