Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A08
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   1.6  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   3.7  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    26   3.7  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   6.5  
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    25   6.5  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.5  

>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +1

Query: 115 TSRPIPHVCCRVLNIVKKLSIIENFHNIFCYGSPVGNLRTDYDQGVLLFKKDGTCYLQIL 294
           T R +P+VC  V    +K  + + F+++     P   LRT    G+ LF  D   +++  
Sbjct: 489 TIRKLPNVCMEVYQ--EKGDVEKAFNHLQVCNLPE-LLRTSNSFGIWLFNSDPMRFMKEA 545

Query: 295 LKQIEV 312
           ++ IE+
Sbjct: 546 IRNIEI 551


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 46  LININARTNKYTNNTMSVIKSILTSRPIPHVCC 144
           ++NI A+ +K  NN +  +  +L     PH  C
Sbjct: 409 ILNIEAKKSKLENNILKCVMIVLPKEFNPHSFC 441


>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 133 HVCCRVLNIVKKLSIIENFHNIFCYGSPVGNLRTDY 240
           + C R L   K+ SIIE   N++ +G+PV   RT +
Sbjct: 583 YYCLRELEKKKEFSIIE---NVYLFGTPVIFKRTSW 615


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
 Frame = +1

Query: 10  LYSGLLLSILHTLININARTNKYTNNTMSVIKSILTSRPIPHV--CCRVLNIVKKLSIIE 183
           L+ G+ L     +I +  +  ++ + + S   S  ++ P+P++           K  II+
Sbjct: 172 LWFGITLFSTLLIITLLHKGQEFYSRSFSSDNSQPSNSPVPNIPPASNDTKTSLKPDIIK 231

Query: 184 NFHNIFCYGSPVGNLRTDYDQGVLLFKKDGTCYLQILLKQIEVCLK 321
           +F +        GN   DY  G L+ KK+    LQ  ++Q++  LK
Sbjct: 232 DFTD--SPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLKQSLK 275


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +1

Query: 46  LININARTNKYTNNTMSVIKSILTSRPIPHVCCRV 150
           L+   +R N + +   ++    L    +PH+CC+V
Sbjct: 34  LLRDKSRVNSFKDKNSTLKIDRLFEENVPHLCCQV 68


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 283 NSTYHPF*KAILLDRNP 233
           NS Y+P+ K IL +RNP
Sbjct: 201 NSIYYPYRKLILENRNP 217


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 16  SGLLLSILHTLININARTNKYTNNTMSVI 102
           S ++LS+   LIN  A  NKY++  +S I
Sbjct: 423 SNVMLSVCTNLINEVASQNKYSSTEISQI 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,787
Number of Sequences: 5004
Number of extensions: 38506
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)