Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_A07
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 100 1e-22
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 70 2e-13
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 63 4e-11
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 62 8e-11
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 59 4e-10
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 54 1e-08
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 44 2e-05
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 28 1.2
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 4.9
SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3... 26 4.9
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 4.9
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 6.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 6.5
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.6
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 100 bits (240), Expect = 1e-22
Identities = 46/111 (41%), Positives = 74/111 (66%)
Frame = +3
Query: 276 LDVEKLVTSKLYEPGANKRIFHVDEHVGMAVAGLISDARQIVETARSEASNYRSQFGTPV 455
L +EK+VTSKL +P N RI VD H+G+A G I D + IV+ AR EA+++R +G+P+
Sbjct: 47 LALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPI 106
Query: 456 PLKYLNERVSMYMHAYTLYSAVRPYGCFR*LMGTWSEHDRPQMYMLDPSGV 608
P + +R+ Y+ +T YS+VRP+G + T+ + + P +YM++P+GV
Sbjct: 107 PGTVIADRLGNYVQLFTCYSSVRPFGVMS-FVATY-DSEGPHLYMVEPNGV 155
Score = 69.7 bits (163), Expect = 3e-13
Identities = 34/59 (57%), Positives = 42/59 (71%)
Frame = +2
Query: 134 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFGRRKTGNIKIV 310
MSSIGTGYDL FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ K K++
Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLL 58
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 70.1 bits (164), Expect = 2e-13
Identities = 37/111 (33%), Positives = 59/111 (53%)
Frame = +3
Query: 276 LDVEKLVTSKLYEPGANKRIFHVDEHVGMAVAGLISDARQIVETARSEASNYRSQFGTPV 455
+ VE+ KL ++I VD HV +A AGL +DAR +++ AR EA N++ PV
Sbjct: 44 IGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPV 103
Query: 456 PLKYLNERVSMYMHAYTLYSAVRPYGCFR*LMGTWSEHDRPQMYMLDPSGV 608
++YL V+ YT VRP+G + G + P++Y +P+G+
Sbjct: 104 SIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGI 154
Score = 51.6 bits (118), Expect = 9e-08
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = +2
Query: 149 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFG 280
+GYD + S FSPDGR+ QVEY +AV T I LRG + +V G
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIG 45
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 62.9 bits (146), Expect = 4e-11
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = +3
Query: 276 LDVEKLVTSKLYEPGAN-KRIFHVDEHVGMAVAGLISDARQIVETARSEASNYRSQFGTP 452
L EK VTSKL E + ++++H+ +++ AVAGL +DA ++ AR Y F
Sbjct: 45 LAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEE 104
Query: 453 VPLKYLNERVSMYMHAYTLYSAVRPYGCFR*LMGTWSEHDRPQMYMLDPSG 605
+P + L RV YT Y +RP+G L W Q++ +PSG
Sbjct: 105 MPCEQLVRRVCDLKQGYTQYGGLRPFG-VSFLYAGWDHIRGYQLFQSNPSG 154
Score = 52.0 bits (119), Expect = 7e-08
Identities = 21/52 (40%), Positives = 34/52 (65%)
Frame = +2
Query: 155 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFGRRKTGNIKIV 310
YD + FSP+GR++QVEYA +A+ ++G +G+ KDG+V K K++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLL 56
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 61.7 bits (143), Expect = 8e-11
Identities = 34/107 (31%), Positives = 56/107 (52%)
Frame = +3
Query: 285 EKLVTSKLYEPGANKRIFHVDEHVGMAVAGLISDARQIVETARSEASNYRSQFGTPVPLK 464
+K V KL + K +F + + +G + G I+DAR V ARSEA+ + + G P+P
Sbjct: 51 QKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCD 110
Query: 465 YLNERVSMYMHAYTLYSAVRPYGCFR*LMGTWSEHDRPQMYMLDPSG 605
L +R++ T +A+RP G L+ + P ++ LDP+G
Sbjct: 111 VLAKRMANIAQVSTQRAAMRPLGVAMTLVAV-DDEIGPSLFKLDPAG 156
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/39 (51%), Positives = 30/39 (76%), Gaps = 1/39 (2%)
Frame = +2
Query: 152 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKD 265
G+D + + FSP+GR++QVEYA KA N+G T +G+ GK+
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKN 44
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 59.3 bits (137), Expect = 4e-10
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Frame = +3
Query: 276 LDVEKLVTSKLYEPGANKRIFHVDEHVGMAVAGLISDARQIVETARSEASNYRSQFGTPV 455
L VEK +TS L E + +++F +D H+G A++GL +DAR I+E AR + N+R + P
Sbjct: 48 LGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQ 107
Query: 456 PLKYLNERVSMYMHAY------TLYSAVRPYGCFR*LMGTWSEHDRPQMYMLDPSG 605
++ + + + RP+G + G EH PQ+Y +PSG
Sbjct: 108 GIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIAGI-DEHG-PQLYHSEPSG 161
Score = 52.8 bits (121), Expect = 4e-08
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +2
Query: 155 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFGRRK 289
YD + FSP+GR+FQVEYA +A++ T IG++ KD VV G K
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEK 52
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 54.4 bits (125), Expect = 1e-08
Identities = 28/94 (29%), Positives = 50/94 (53%)
Frame = +3
Query: 327 KRIFHVDEHVGMAVAGLISDARQIVETARSEASNYRSQFGTPVPLKYLNERVSMYMHAYT 506
K++ +D+H+G+A+AGL DAR + + EA + ++ F P+P++ L +V+ T
Sbjct: 61 KKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINT 120
Query: 507 LYSAVRPYGCFR*LMGTWSEHDRPQMYMLDPSGV 608
RPYG ++G + P + PSG+
Sbjct: 121 QEYGRRPYGVGFLVIG--YDESGPHLLEFQPSGL 152
Score = 38.3 bits (85), Expect = 9e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 155 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVV 274
YD A+ +SP GR+ QVEYA +A++ +GL K V
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAV 45
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 44.0 bits (99), Expect = 2e-05
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +2
Query: 155 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFGRRK 289
Y S + FSP+G++ Q+EYA AV T +G++ DGVV K
Sbjct: 5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEK 49
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 151 WIRFISFTILS*WPCIPSGI 210
W RFISF + WPCI +
Sbjct: 32 WHRFISFLAIYLWPCIMGSV 51
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 4.9
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +3
Query: 345 DEHVG-MAVAGLISDARQIVETARSEASNYRSQFGTPVPLKYLNERVSMYMHAYTLYSAV 521
D H+G + + + ++ V T+ + + ++GTPVP+K++ + MH+ A+
Sbjct: 393 DHHLGGINSITFLENGKRFVTTSDDSSMRFW-EYGTPVPIKFV---ADIAMHSMPRV-AL 447
Query: 522 RPYG 533
RP G
Sbjct: 448 RPNG 451
>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 519 RHCIECMHAYT*TLFRSSISEVLVYQT 439
RHC + H+Y FRS E ++Y T
Sbjct: 101 RHCTDYGHSYEWPYFRSLRRESMLYHT 127
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.8 bits (54), Expect = 4.9
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 7/85 (8%)
Frame = -2
Query: 488 HRHSFVQVFQRYWCTKLRSVI*CFRTSCLNNLSSIR------DKTSNCHTN-MLINMENP 330
H H ++VF C+K++S I + L+ L ++ DK TN LI E
Sbjct: 358 HEHMRLRVFFSSCCSKIQSEIYSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIRSEIG 417
Query: 329 LICTGFIQF*CYQFFYVQIPHHLYL 255
C C ++F+++I ++LYL
Sbjct: 418 EYCKTLDINSCREWFWIRI-YYLYL 441
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 293 QFFYVQIPHHLYLLD 249
+FF V IP+HL++LD
Sbjct: 39 RFFMVTIPYHLHVLD 53
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = -1
Query: 363 PYQHAHQHGKSSYLHRVHTILMLPVFLRPNTTPSLPLRPMTVPEFSTAFAAYSTWNTRPS 184
PY + G +H +TIL P+ N + + + T+P F++ T P+
Sbjct: 502 PYHYEIGSGLPQQMHATNTILTNPIDPNSNISTPVGMHLCTLPYTYQPFSSVEKIETPPN 561
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 82 FNIKFVVNKITYFQRRLQAIS*HLTL 5
F + FVVN YFQ R++A+ TL
Sbjct: 1004 FFVLFVVNLRHYFQERMKALKFRSTL 1029
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,115
Number of Sequences: 5004
Number of extensions: 52221
Number of successful extensions: 161
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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