Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A07
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.1  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   7.2  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   7.2  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 367 TAIPTCSSTWKILLFAPGSYNFDVTSFST 281
           T+ P   S  KI    PGS+NF + + +T
Sbjct: 289 TSTPNFLSEAKIFPPTPGSFNFSMAALAT 317


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = -3

Query: 409 AVSTICLASEIRPATAIPTCSSTWKI-LLFAPGSYNFDVTSFSTS 278
           AVS +C+A  + P   +   S  W    +      +FDV S + S
Sbjct: 84  AVSDLCVALLVMPMALLYEISGNWSFGTIMCDLWVSFDVLSCTAS 128


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 552 PLVTGSIHMDVRH 514
           PLV+G++H+  RH
Sbjct: 141 PLVSGALHLLFRH 153


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 552 PLVTGSIHMDVRH 514
           PLV+G++H+  RH
Sbjct: 109 PLVSGALHLLFRH 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,954
Number of Sequences: 438
Number of extensions: 3584
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)