Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A04
         (289 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   2.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    24   3.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    23   6.7  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    23   8.8  

>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +2

Query: 74  PSSVQRAATA-VISNVICNSGRFIAPERATLFHFLVYEILC 193
           P +V    TA VI+NV+     + AP+ AT    L   I C
Sbjct: 177 PVAVMSLITAKVIANVMAKDETYTAPQIATCLALLAGAITC 217


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 24.2 bits (50), Expect = 3.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 68  SEPSSVQRAATAVISNVICN 127
           S P S+QR  T  I  ++CN
Sbjct: 331 SNPLSIQRTITHFIKKLVCN 350


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 167  HFLVYEILCTKTMCNLSCYQLVRG 238
            HF  +++L  K + N SC   ++G
Sbjct: 1110 HFRQHDVLGMKNLFNFSCSNKIKG 1133


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 172 KMKERRAFRRNEASTVTYYIRD 107
           K+K    FRRN A+TV+  +R+
Sbjct: 27  KLKNLFHFRRNRAATVSTSVRN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,002,333
Number of Sequences: 5004
Number of extensions: 16475
Number of successful extensions: 24
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)