Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_A02
(636 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 145 4e-36
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce... 48 9e-07
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 27 2.3
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 26 5.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 6.9
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 25 6.9
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy... 25 9.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 9.1
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 25 9.1
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 9.1
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce... 25 9.1
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 145 bits (352), Expect = 4e-36
Identities = 67/128 (52%), Positives = 91/128 (71%)
Frame = +3
Query: 33 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 212
K+ YF K+ L ++Y F+V DNV SQQM +R LRG + ++MGKNTM+R+A++ +
Sbjct: 8 KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGII 67
Query: 213 ETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTG 392
P LE+LLP ++GNVGFVFT DL +VR+ ++ N + APARP AIAPL V +PA NTG
Sbjct: 68 NDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTG 127
Query: 393 LGPEKTSF 416
+ P KTSF
Sbjct: 128 MEPGKTSF 135
Score = 107 bits (256), Expect = 2e-24
Identities = 48/77 (62%), Positives = 60/77 (77%)
Frame = +1
Query: 406 RLXFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVQQVY 585
+ FFQAL IPTKI++GTIEI +DVH++ KVG SEATLLNMLNISPF+YG+ V +Y
Sbjct: 132 KTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIY 191
Query: 586 DSGTIFAPAILDIKPED 636
D G +F+P ILD+ ED
Sbjct: 192 DQGNVFSPEILDVSEED 208
>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 48.4 bits (110), Expect = 9e-07
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Frame = +3
Query: 33 KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHL 212
K+ F + Q LD + +I N+ + +++IR +G S + MGK +M KA+
Sbjct: 23 KAALFSGVQQSLDSFDYMWIFDVTNMRNTYLKRIRDDWKG-SRIFMGKTKVMAKALGHTP 81
Query: 213 ETNPA--LEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAP-ARPGAIAPLSVVIPA 380
E A + KL + G VG +FT +V E+ VQ AR GA+AP + VIPA
Sbjct: 82 EEEHAENVSKLTKLLHGAVGLLFTNSKPDEVIG-YFESFVQNDFARAGAVAPFTHVIPA 139
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = -1
Query: 585 VHLLDNKTIRKGRDVQHVEKSSFRSSHLITRLQDMDIIDNFNSTL*NLSGDGKSLEEXKS 406
VH LD T+R G + SSFR S D I + +L G +L +
Sbjct: 62 VHCLDIPTVRPGSSMSRTSASSFRYSSPQKSSIDTPITSSDQGLTPDLVGSSNALNKPTR 121
Query: 405 SQD 397
D
Sbjct: 122 ESD 124
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = +3
Query: 231 EKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGL---GP 401
E + ++ N G + T D+ L ++ APARP + P + P + L P
Sbjct: 313 EPMTSNLTSNSGSM-TNSTSTDLPTSNLPSQ-NAPARP--VEPSPSIQPPNLLNLPTASP 368
Query: 402 EKTSFLPGS 428
E TS+LPGS
Sbjct: 369 ESTSWLPGS 377
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -2
Query: 416 KXSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 249
K +L K + D+R + R LD LQ +I +IST + N +L+
Sbjct: 271 KQEVLILKEKIKKIEDERMRQMSVSSDRTLDSQLQTVNENITRISTSIELKNTALE 326
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 25.4 bits (53), Expect = 6.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 470 IISIVPFEILVGMERAWKKXSLLRTKASV 384
IIS P + L+G+ AW L R + S+
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSI 317
>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 9.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 403 SGPRPVL*AGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 275
+G PV + + G++ P AGAW L N L T ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 159 IVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLV 293
I L+G N ++ DH++ +P ++ P+I V ++GDLV
Sbjct: 401 IPLLGMNKVILAG--DHMQLSPNVQSKRPYISMFERLVKSQGDLV 443
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 153 HSIVLMGKNTMMRKAIKDHLE 215
HS++ KNT KA+ HLE
Sbjct: 408 HSLLQKSKNTSSTKALTSHLE 428
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 179 HHDEESHQGPS*NKSSSRKTASSHQG 256
HH+ + S S+SRK A SH G
Sbjct: 431 HHNNDKRAHVSRRHSTSRKIAQSHTG 456
>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 25.0 bits (52), Expect = 9.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 585 VHLLDNKTIRKGRDVQHVEK 526
V L D +RKG DVQ +EK
Sbjct: 289 VLLSDTAGLRKGEDVQEIEK 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,107
Number of Sequences: 5004
Number of extensions: 62074
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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