Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_A02
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 144 4e-35
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 144 5e-35
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 144 5e-35
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.77
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 30 1.8
03_05_1068 + 30114682-30114868,30114947-30115239,30115354-301155... 29 3.1
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 28 5.4
02_04_0427 - 22809481-22810335 28 5.4
02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503 28 5.4
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 28 5.4
04_04_0887 + 29095087-29096166 28 7.1
03_06_0608 - 35039319-35039903,35040328-35040387 28 7.1
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 9.4
05_01_0470 - 3747783-3748097,3749433-3750305 27 9.4
03_04_0243 + 19298293-19299117 27 9.4
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 144 bits (350), Expect = 4e-35
Identities = 73/135 (54%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Frame = +3
Query: 18 TRATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKA 197
T+A K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+
Sbjct: 6 TKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRC 65
Query: 198 IKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVV 371
IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+ VV
Sbjct: 66 IKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVV 125
Query: 372 IPAHNTGLGPEKTSF 416
+P NTGL P +TSF
Sbjct: 126 VPPGNTGLDPSQTSF 140
Score = 103 bits (246), Expect = 2e-22
Identities = 45/74 (60%), Positives = 59/74 (79%)
Frame = +1
Query: 415 FFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVQQVYDSG 594
FFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Query: 595 TIFAPAILDIKPED 636
++F+P +LD+ +D
Sbjct: 200 SVFSPEVLDLTEDD 213
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 144 bits (349), Expect = 5e-35
Identities = 73/135 (54%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Frame = +3
Query: 18 TRATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKA 197
T+A K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+
Sbjct: 6 TKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRC 65
Query: 198 IKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVV 371
IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+ VV
Sbjct: 66 IKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVV 125
Query: 372 IPAHNTGLGPEKTSF 416
+P NTGL P +TSF
Sbjct: 126 VPPGNTGLDPSQTSF 140
Score = 104 bits (249), Expect = 7e-23
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = +1
Query: 415 FFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVQQVYDSG 594
FFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Query: 595 TIFAPAILDIKPED 636
++F+P +LD+ ED
Sbjct: 200 SVFSPEVLDLTEED 213
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 144 bits (349), Expect = 5e-35
Identities = 73/135 (54%), Positives = 95/135 (70%), Gaps = 2/135 (1%)
Frame = +3
Query: 18 TRATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKA 197
T+A K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R+
Sbjct: 6 TKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRC 65
Query: 198 IKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVV 371
IK H + N +L+P + GNVG +FT+GDL +VR+++ + KV APAR G +AP+ VV
Sbjct: 66 IKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVV 125
Query: 372 IPAHNTGLGPEKTSF 416
+P NTGL P +TSF
Sbjct: 126 VPPGNTGLDPSQTSF 140
Score = 104 bits (249), Expect = 7e-23
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = +1
Query: 415 FFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVQQVYDSG 594
FFQ L+IPTKI+KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG
Sbjct: 140 FFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSG 199
Query: 595 TIFAPAILDIKPED 636
++F+P +LD+ ED
Sbjct: 200 SVFSPEVLDLTEED 213
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.1 bits (67), Expect = 0.77
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 222 PALEK-LLPHIKGN---VGFVFTRGDLVDV--RDKLLENKVQAPARPGAIAPLSVVIPA 380
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 29.9 bits (64), Expect = 1.8
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 9/74 (12%)
Frame = +3
Query: 225 ALEKL-LPH--IKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSV----VIPAH 383
AL+KL LPH ++GN+GF+ + + + D +L++ A P + LS I H
Sbjct: 401 ALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLISFIADH 460
Query: 384 N--TGLGPEKTSFL 419
N G PEK S L
Sbjct: 461 NKLAGSLPEKMSNL 474
>03_05_1068 +
30114682-30114868,30114947-30115239,30115354-30115591,
30115977-30117871
Length = 870
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = -2
Query: 356 SNGSRTSRGLDFVLQQFITHINKISTGEDKANISLD 249
+NG+R G + L+Q++T + ++TGE K ++ +
Sbjct: 63 NNGNRGRVGTEASLEQWLTSLPSLTTGESKFGVTFE 98
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/86 (23%), Positives = 34/86 (39%)
Frame = -2
Query: 566 RPYEKGEMFNMLRRVASEAPTLSPGFRIWTSLIISIVPFEILVGMERAWKKXSLLRTKAS 387
RP +K + R V E P + W ++ FE + E A K + A
Sbjct: 240 RPKKKAKAARKTRDVTPE-PDVEAS--AWPAVESDTSEFEFVTSDEEAADKEAPAAEPAK 296
Query: 386 VMSGNDDRQWSNGSRTSRGLDFVLQQ 309
++W +GS +S D+V+ +
Sbjct: 297 TKGKKGRKRWGSGSESSSDSDYVISE 322
>02_04_0427 - 22809481-22810335
Length = 284
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 224 WICFKMVLDGFPHHGVFAHEHNAVTTQ*N 138
W F+ + FP GVF HE +T Q N
Sbjct: 123 WRSFEASIANFPSPGVFGHEPIVITNQRN 151
>02_03_0234 - 16696440-16696658,16696822-16696945,16698070-16698503
Length = 258
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 251 DVRKQFFESWICFKMVLDGFPHHGVFAHEHNAVTTQ*NT 135
D Q+FE+W C ++ GF G F HN Q T
Sbjct: 179 DSEVQYFENWSCARL---GFSSSGCFNQHHNLDDVQAET 214
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/51 (27%), Positives = 30/51 (58%)
Frame = +1
Query: 463 EIINDVHILKPGDKVGASEATLLNMLNISPFSYGLVVQQVYDSGTIFAPAI 615
E++ +++P D VG S +++ +++ P+S VV+ +Y+S + A I
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQKI 395
>04_04_0887 + 29095087-29096166
Length = 359
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -3
Query: 439 WGWKEPGRXEVFSGPRP 389
WGWK P R FS P P
Sbjct: 119 WGWKSPRRGNHFSPPPP 135
>03_06_0608 - 35039319-35039903,35040328-35040387
Length = 214
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -2
Query: 431 ERAWKKXSLLRTKASVMSGNDDRQWSNGSRTSRGLDFVLQ 312
+R W+ S + +A+V+ D++ W + LD+ ++
Sbjct: 57 QRKWRTFSADQAQATVVDAGDNKTWEEAKQILTSLDYSIE 96
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 33 KSNYFVKIIQLLDEYPKCF 89
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>05_01_0470 - 3747783-3748097,3749433-3750305
Length = 395
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Frame = +1
Query: 259 MLALSSPVEILL-MCVINC--WRTKSKPRLVLEPLLHCLSSFPLITLALV-LRRLXFF-- 420
M ++++P+ ILL M + + + S L++E LL LSS L+ +ALV L L FF
Sbjct: 305 MFSVTTPLGILLGMAIFHMTGYDDSSPNALIIEGLLGSLSSGILVYMALVDLISLDFFHN 364
Query: 421 QALSIPTKISK 453
+ +S K+ K
Sbjct: 365 KMMSSSNKLKK 375
>03_04_0243 + 19298293-19299117
Length = 274
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 373 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVKTKPTFP 254
+ TD+ + APG A A + S SRTS +P + PT P
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSP 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,677,110
Number of Sequences: 37544
Number of extensions: 438604
Number of successful extensions: 1237
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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