Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A01
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   1.3  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    25   4.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   4.0  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    23   4.1  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   5.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   7.0  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   7.0  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   7.0  
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.0  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    24   9.3  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    24   9.3  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +2

Query: 110 PQPETVLAPPPVLQSFQKAN-GSNVLPKRTELAHQSSSQQSTTVEHGALGSNIAGTHTQH 286
           P+ + VL+PPP++ +F K    SN       +  + S+ Q T +      S++       
Sbjct: 590 PEKQKVLSPPPIITNFDKETLASN--EAHEAVPQKPSAPQVTRLMAPQDSSSVVTPSPTS 647

Query: 287 VLDPNNKV 310
           +LDP   V
Sbjct: 648 LLDPARAV 655


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  SSYRCHGSASTRNGAGSTSCIAE 153
           +SYRCHG A TR G    S I E
Sbjct: 133 TSYRCHGFAYTR-GLSIRSIIGE 154


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 71  VPIPAARGSTSLERRHRVSSS 9
           +P+P A GSTS+  R ++  S
Sbjct: 231 IPVPPAHGSTSMTSRSKLDDS 251


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 19/57 (33%), Positives = 22/57 (38%)
 Frame = +2

Query: 182 LPKRTELAHQSSSQQSTTVEHGALGSNIAGTHTQHVLDPNNKVPVQLTLPAQPGVPG 352
           LP   +   QS+ Q S  V        I GT     L P    P  + LP  PG PG
Sbjct: 460 LPPWQQPTQQSAVQPSNLVP-SQNAPFIPGTSAP--LPPTTFAPPGVPLPPIPGAPG 513



 Score = 21.0 bits (42), Expect(2) = 4.1
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +2

Query: 326 LPAQPGVPGS 355
           +PA PG+PG+
Sbjct: 545 VPAMPGIPGA 554


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 191 RTELAHQSSSQQSTTVEHGALGSNIAGTHTQHV 289
           RT++ +QS  Q  TTV+ G++  N+  T  + +
Sbjct: 379 RTDVPNQSFQQYPTTVDGGSMIPNLYPTSAEQM 411


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 65  SARRNKLQATGAMDLPQPETVLAPPPVLQSFQKAN 169
           S++  K      M  P P T+   PP + SF K+N
Sbjct: 339 SSKERKRSVENEMLKPHP-TIFESPPEITSFDKSN 372


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 21/74 (28%), Positives = 28/74 (37%)
 Frame = +2

Query: 140 PVLQSFQKANGSNVLPKRTELAHQSSSQQSTTVEHGALGSNIAGTHTQHVLDPNNKVPVQ 319
           P    ++ AN S      T +   S   QSTT  H     + A      +LD   K    
Sbjct: 281 PKKARYESANVSFNDTSFTNVPTSSPLHQSTTANHPEKTPSRAAASLLSILDSKEKNTPS 340

Query: 320 LTLPAQPGVPGSQP 361
           +T  A+ G P S P
Sbjct: 341 IT--AKAGSPQSAP 352


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 7/26 (26%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = +3

Query: 87  KLQVPWICL-NQKRCWLHLLYCRVSK 161
           ++ +P +C+ ++   W+ L++CRV++
Sbjct: 480 RVSLPEVCVTSEDYMWIQLMFCRVNQ 505


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 98  AMDLPQPETV-LAPPPVLQSFQKANGSNVLPKRTELAHQSSSQQSTT 235
           A   P P+   +  P +L+ F+K  G N+  +   LA  S+    TT
Sbjct: 221 ATQAPSPQQAEIIRPKILKYFEKVLGENIAAESLMLALLSNVVHKTT 267


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +2

Query: 158 QKANGSNVLPKRTELAHQSSSQQSTTV----EHG-ALGSNIAGTHTQHVLDPNNKVPV 316
           +K NG ++LP+R+     S+  +S  +    E G AL  N +G    +   P+++  +
Sbjct: 418 EKCNGLDLLPERSHKHRHSAPPRSKLISSKSEAGRALPGNTSGASISNTSSPHSEASI 475


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +1

Query: 58  AGIGTTKQTSSYRCHGSASTRNGAGSTS 141
           + + T+  TSS +   S+S+R+G+ S+S
Sbjct: 520 SSVHTSSATSSSKSSSSSSSRSGSSSSS 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,011,198
Number of Sequences: 5004
Number of extensions: 40924
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)