Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_A01
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    27   0.093
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.1  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   8.1  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   8.1  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 27.1 bits (57), Expect = 0.093
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +2

Query: 170 GSNVLPKRTELAH-QSSSQQSTTVEHGALGSNIAGTHTQHVLDPNNKVPVQLTLPAQPGV 346
           G N + + ++ A  QS    ST+     + + I      ++ +P+       + PA+  +
Sbjct: 572 GENTIIRNSQQAPGQSPDWPSTSQIQRGVNAAIRSQEPFYITEPHQI----FSFPARLSL 627

Query: 347 PGSQPRSFTIQIPTSALNGNKLHQVLTGPII 439
           P  QP+ F +Q      + N L+ V  GP+I
Sbjct: 628 PKGQPQGFPLQFLVVISSSNPLN-VPYGPVI 657


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 263 IAGTHTQHVLDPNNKVP 313
           I+G H  ++L+P+ K P
Sbjct: 193 ISGWHGDNMLEPSPKTP 209


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 74  RNKLQATGAMDLPQPETVLAPPP 142
           R  L+A  A  +P+P  ++  PP
Sbjct: 37  RQSLEARSADLVPEPRYIIDVPP 59


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = +2

Query: 185 PKRTELAHQSSSQQSTTVEHGALGSNIAGTHTQHVLDPNNKVP 313
           P+  E ++ SSS  S    H + G +     +   + P  K+P
Sbjct: 60  PRSLEGSYDSSSGDSPVSSHSSNGIHTGFGGSIITIPPTRKLP 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,560
Number of Sequences: 438
Number of extensions: 2935
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)