Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P23
(597 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 270 5e-73
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 31 0.82
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 28 4.4
AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like pro... 28 4.4
Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical p... 28 5.8
Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical pr... 27 7.7
AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protei... 27 7.7
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 270 bits (662), Expect = 5e-73
Identities = 124/161 (77%), Positives = 134/161 (83%)
Frame = +1
Query: 31 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 210
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 211 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 390
SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 391 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPG 513
KPQG VARV IG + S+R + IEA RRAKFKFPG
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPG 161
Score = 41.1 bits (92), Expect = 6e-04
Identities = 15/25 (60%), Positives = 22/25 (88%)
Frame = +2
Query: 512 GRQKIYVSKKWGFTRYDREEFEKLR 586
GRQ I S+KWGFT++DRE++E++R
Sbjct: 161 GRQIIVSSRKWGFTKWDREDYERMR 185
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 30.7 bits (66), Expect = 0.82
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -2
Query: 395 GFPNAPRIPVWSLSAPA 345
GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Frame = +2
Query: 218 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 313
RRWK+ V +AT+TS R+ V+ +STS TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540
>AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like
protein 2 protein.
Length = 205
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 91 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 237
R C + K I D K+ A ++ + +++ EYEQ++S +AG+
Sbjct: 93 RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141
>Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical
protein R53.1b protein.
Length = 510
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 408 YCALGFPERTT-HPSLEPISSSARQHFIDA 322
Y +LG + T HP+L +SS R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494
>Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical
protein R53.1a protein.
Length = 519
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 408 YCALGFPERTT-HPSLEPISSSARQHFIDA 322
Y +LG + T HP+L +SS R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503
>Z81466-2|CAC42256.1| 954|Caenorhabditis elegans Hypothetical
protein C09H6.2b protein.
Length = 954
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 109 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 14
AH +K I D + NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841
>Z81466-1|CAB03869.1| 982|Caenorhabditis elegans Hypothetical
protein C09H6.2a protein.
Length = 982
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 109 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 14
AH +K I D + NI+ ISLVG PL + Q+
Sbjct: 840 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 869
>AJ133374-1|CAB40208.1| 954|Caenorhabditis elegans lin-10 protein
protein.
Length = 954
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 109 AHPDKTEI*DTVYSYNIDNISLVGAPLCSPQS 14
AH +K I D + NI+ ISLVG PL + Q+
Sbjct: 812 AHSNKLNIGDQII--NINGISLVGLPLSAAQT 841
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,631
Number of Sequences: 27780
Number of extensions: 328360
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -