Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P19
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces pomb...    29   0.32 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.32 
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    29   0.42 
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   1.3  
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch...    27   1.3  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    27   1.7  
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr...    25   5.2  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   6.8  
SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual          25   6.8  
SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   6.8  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   9.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.0  
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    25   9.0  

>SPAC10F6.04 |||RCC domain protein Ats1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 351

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +1

Query: 388 APIYIPYKSLETKVVGLAAGRAHTVILTDNEGVFTLGNNAYGQCG 522
           +P  +P+     K+   + G  HT++L ++  ++  G+N  GQCG
Sbjct: 23  SPQIVPFDRAIEKI---SCGGNHTLLLDEDSQLWACGDNRKGQCG 64


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 119  HRIHKSCVINWFKISFTSNAP 57
            H+ H SC+  WFK S +S  P
Sbjct: 1581 HKFHASCLYKWFKSSNSSRCP 1601


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 29.1 bits (62), Expect = 0.42
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 397 YIPYKSLETKVVGLAAGRAHTVILTDNEGVFTLGNNAYGQCG 522
           +IP   +  KV+ ++    H++ LT    +++ G N  G+ G
Sbjct: 239 FIPIPGIIHKVIQISVSHTHSLALTKFGSIYSWGKNGSGELG 280



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +1

Query: 424 KVVGLAAGRAHTVILTD--NEGVFTLGNNAYGQCG 522
           K++ + A + H+V+LTD  ++ V+  G  A G+ G
Sbjct: 196 KILDVQASKFHSVVLTDEPSQNVYVCGIGAGGRIG 230



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = +1

Query: 424 KVVGLAAGRAHTVILTDNEGVFTLGNNAYGQCG 522
           +++G+AAG++++V  TD + +++ G N  GQ G
Sbjct: 306 QIIGMAAGKSYSVAWTDTD-IYSWGLN-NGQLG 336


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 84  EPVNNTRFMYSMVVQ--SVLSTIQSRFILSIMTIMTC*HLSFVIFIYRHTLSGYTYSLWV 257
           E  N  R ++  + Q  ++L    + FI+    I+T   ++ + F++  +LS  T S+W+
Sbjct: 118 ERSNRPRSIFGKIKQFFNILLRSFNLFIIFSPIIITLPFIALISFLHLRSLSSLTVSIWL 177

Query: 258 WF 263
            F
Sbjct: 178 RF 179


>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
           Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +3

Query: 12  LMISFYSSFEPEKFSRCIGSETYFEPVNNTRFMYSMVVQSVLSTIQSR 155
           L++ F  SF+    S CI S ++   + N +  + +V   +L+ +  R
Sbjct: 198 LIVQFRKSFQRNDKSMCISSSSFIAHLINQKIAHEIVGLQILAVLLER 245


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = +3

Query: 117 MVVQSVLSTIQSRFILSIMTIMTC*HLSF-VIFIYRHT--LSGYTYSL--WVWFHSCLH 278
           MV+  +++ +   F    +T  TC H +  ++  Y  T  L+G   S+  WVW HS L+
Sbjct: 280 MVISLIIAPLWIYFTFKYIT--TCIHANIDIVHFYLETPFLAGIFSSIFFWVWCHSLLY 336


>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 514

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +1

Query: 232 QVTHIACGYGFTVASIKTEEQHKVFGTGINTDSQIGYHAPRVGHPLEMLL 381
           Q+T+    Y       K ++   +  TG   D   GY+A R+G P + L+
Sbjct: 243 QITYYLYSYLSVYKQGKADDVRFIVPTGNFGDILAGYYAKRMGLPTKQLV 292


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 424 KVVGLAAGRAHTVILTDNEGVFTLGNNAYGQCG 522
           ++  LA G  H + LT    V+T GN    Q G
Sbjct: 227 EICQLATGTDHIIALTTTGKVYTWGNGQQFQLG 259


>SPBC27.05 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 108

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 YVFYGGTKCPVYNTIKIHSQYYDNNDLL 190
           Y+FY G  C +   ++I S++Y    L+
Sbjct: 11  YLFYSGINCILLYQLEIESKFYIRYQLI 38


>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 301 VFGTGINTDSQIGYHAPRVGHPLEMLLSPAPIYIPYKSLETKVVGLAAGRAHTVILTDNE 480
           V   GI  +++   HA +V + L   +   P+ +   +  +KV+      A+  I+  NE
Sbjct: 299 VLNIGILENTKTYIHAAQVNNDLARPVILDPVAVGATTARSKVINTLLNYAYYDIIKGNE 358

Query: 481 G 483
           G
Sbjct: 359 G 359


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 504 IVAQCEHPFVISQYDGVRSTSSQPYHLSLQALVRYVD 394
           I+ Q   PFV+    G R+T S  +H++  AL + ++
Sbjct: 130 ILEQFNAPFVVPACVGTRNTISFSFHVTPPALSKLLN 166


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = +1

Query: 133 SCLQYNQDSFSVL*Q**PVNIYRLLFSYIDIRFQVTH-IACGYGFTVASIKTEEQHKVFG 309
           SC  +N ++   +    P+   +   +Y+  +  +   I    G  + S+   E+ +++G
Sbjct: 382 SCKGFNDNALDHIIAQAPIRPVKKATTYVPNKATICQWIMRAQGQHLNSLSIRERCRIYG 441

Query: 310 TGINTDSQIGYHAPRVGHPLEMLLSPAPIYI 402
              N    IG+   RV    E++ S  P+ +
Sbjct: 442 AMANMLGSIGFSRLRVKMLRELVASLTPVLL 472


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 523 YHIAHKHCCPV*TP 482
           YH  H HC P+ TP
Sbjct: 369 YHKLHGHCSPITTP 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,398,765
Number of Sequences: 5004
Number of extensions: 52201
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)