Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P19
         (523 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   0.47 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   0.47 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   0.47 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   1.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   5.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   7.7  

>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 52  SLGALEVKLILNQLITQDLCILWWYKVSCLQ 144
           SL +L   LI NQ IT  + + W    SCL+
Sbjct: 230 SLTSLNAYLIKNQTITCPIKVSWRGNYSCLK 260


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 52  SLGALEVKLILNQLITQDLCILWWYKVSCLQ 144
           SL +L   LI NQ IT  + + W    SCL+
Sbjct: 281 SLTSLNAYLIKNQTITCPIKVSWRGNYSCLK 311


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 25.0 bits (52), Expect = 0.47
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 52  SLGALEVKLILNQLITQDLCILWWYKVSCLQ 144
           SL +L   LI NQ IT  + + W    SCL+
Sbjct: 230 SLTSLNAYLIKNQTITCPIKVSWRGNYSCLK 260


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 125  YHHRIHKSCVINWFKISFTSN 63
            YHH ++K C I+  ++  T +
Sbjct: 1679 YHHNVNKHCTIHRTQVKETDD 1699


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 364 DDLHVVRGIQFGSLCLFQ 311
           D  HVVRGI+ G L   Q
Sbjct: 2   DSSHVVRGIEHGGLYYHQ 19


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/52 (23%), Positives = 21/52 (40%)
 Frame = +2

Query: 107 YVFYGGTKCPVYNTIKIHSQYYDNNDLLTFIVCYFHI*TYAFRLHI*LVGMV 262
           + + G   C +  TI  H + + N    +  V +    TY   +   L GM+
Sbjct: 159 FAWIGSVVCSLPQTIVFHLETHPNVTWYSQCVTFNAFPTYTHEITYSLFGMI 210


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = -3

Query: 176 CHNTENES*LYCRQDTLYHHRIHKSCVINWFKISFT 69
           C N  +   L C      HH   K C +N   ++ T
Sbjct: 110 CVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTIT 145


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,662
Number of Sequences: 438
Number of extensions: 3539
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)