Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P18
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    66   2e-12
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    29   0.50 
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    28   0.66 
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    25   4.7  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   4.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   8.2  
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr...    25   8.2  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
 Frame = +3

Query: 147 ISLKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARD-KTKVAINADI 323
           +S K+ ID T    D I DV  FEKYL +R+KV+GKT NLG+ VV++R+  +K+A+ A I
Sbjct: 8   VSNKYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHI 67

Query: 324 PFS 332
            FS
Sbjct: 68  DFS 70



 Score = 29.5 bits (63), Expect = 0.29
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 370 RKTIFGDWLRVVASAHDSYELRYF 441
           +K    DWLRVV++    YELRY+
Sbjct: 83  KKHSLRDWLRVVSTKKGVYELRYY 106


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -1

Query: 277 T*LPRLFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIF-LLAPLPRILPPFTP 101
           T +P+L  L   +T  +  F++    R+    G ++++  L ++F +L  L RI+ PFTP
Sbjct: 714 TVVPQLLGLIEEMTNWYIRFNR---RRLKGEDGEIETINALNVLFEVLFTLVRIMGPFTP 770

Query: 100 FL 95
           F+
Sbjct: 771 FI 772


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 32  QDGSYKEARRKEKVPVTPEDW*ERSKRWQNSRQRC 136
           Q  SY EA   EK+   P+D   ++  W +S  RC
Sbjct: 103 QKYSYSEAPEHEKIGFFPKDIDRKTANWIDSEGRC 137


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -1

Query: 175 VQSMVNLRLIFLLAPLPRILPPFTPFLPVFWCNWHFFFATGF-FVTAILA 29
           +++M  L  IF    +  I+    PF    + N   FFAT F F+ A++A
Sbjct: 181 MRAMYILGFIFFALTIVSIVISCLPFFGPLFLNVFSFFATIFTFIAAVIA 230


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +3

Query: 237  VKVEGKTNNLGNHVVIARDKTKVAINADIP 326
            +K+ G  NNL +++ +   +T++  + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 201  DVGNFEKYLKERVKVEGKTNNLGNH 275
            + GN +KY +  +KV GK ++   H
Sbjct: 955  EAGNLKKYDQPNLKVSGKNDSFVTH 979


>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 307

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 413 AEATTRSQ-SPKIVFLEVTLGQVFEIPL*EGNVCVDS 306
           AE T R Q +PK   L+V LG V +  L   +VCV +
Sbjct: 86  AEITKRVQGTPKEKKLQVVLGDVIKTDLPYFDVCVSN 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,857,290
Number of Sequences: 5004
Number of extensions: 34124
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)