Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P17
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   4.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   4.6  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   6.1  

>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 39  TKEFIIVAFHSLHRPWNYYYNHIMNYSVL 125
           +K+ +I+AFHSL     YY    + Y ++
Sbjct: 102 SKQQLIIAFHSLDIQLAYYIKKQIGYGIV 130


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -1

Query: 290  NKAHNPICDKILKKKKRYFSHVSLCLTLITFL 195
            +K H+ +  + L+  K+Y + VS+C   I +L
Sbjct: 1223 SKWHSKVFSRNLRLLKKYLNDVSICWEQIVYL 1254


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -3

Query: 258 IEKKKTIFQSRIFVSHSNHVFAVNLYDNRKKRTLWFV 148
           +++  T+F + I   + NH+F + L   +  RT  FV
Sbjct: 744 LDRVFTVFNANILAPYINHIFFLLLSRLKNSRTERFV 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,472,918
Number of Sequences: 5004
Number of extensions: 25455
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)