Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P16
         (589 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC070077-1|AAH70077.1|  968|Homo sapiens serine/threonine kinase...    33   0.57 
AB015718-1|BAA35073.1|  968|Homo sapiens protein kinase protein.       33   0.57 
BC132811-1|AAI32812.1|  130|Homo sapiens HIST2H2AB protein protein.    30   5.3  

>BC070077-1|AAH70077.1|  968|Homo sapiens serine/threonine kinase 10
           protein.
          Length = 968

 Score = 33.5 bits (73), Expect = 0.57
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 351 NEP-PRPSGDATANTTAAPKPIAGNEN--LIQNPIRTPTPNARDLIVQ 485
           NEP  +PSGD +  TT+ P    GNEN   +  P+R   P + D  +Q
Sbjct: 376 NEPCSQPSGDRSLQTTSPPVVAPGNENGLAVPVPLRKSRPVSMDARIQ 423


>AB015718-1|BAA35073.1|  968|Homo sapiens protein kinase protein.
          Length = 968

 Score = 33.5 bits (73), Expect = 0.57
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 351 NEP-PRPSGDATANTTAAPKPIAGNEN--LIQNPIRTPTPNARDLIVQ 485
           NEP  +PSGD +  TT+ P    GNEN   +  P+R   P + D  +Q
Sbjct: 376 NEPCSQPSGDRSLQTTSPPVVAPGNENGLAVPVPLRKSRPVSMDARIQ 423


>BC132811-1|AAI32812.1|  130|Homo sapiens HIST2H2AB protein protein.
          Length = 130

 Score = 30.3 bits (65), Expect = 5.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 322 GDARISRAGRTSRQGPQAMLQQTPRPPRNRSQETRI 429
           G AR     R+SR GPQ    +  RPPR  +   R+
Sbjct: 9   GKARAKAKSRSSRAGPQPPAGRAHRPPRKGNHAERV 44


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,840,697
Number of Sequences: 237096
Number of extensions: 1737058
Number of successful extensions: 5510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5498
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)