Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P16
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage ... 31 0.80
Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical pr... 28 5.7
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 5.7
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 5.7
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 5.7
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 27 7.5
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 27 7.5
AF016449-3|AAG23997.2| 337|Caenorhabditis elegans Serpentine re... 27 9.9
>AF025464-4|AAB71017.3| 310|Caenorhabditis elegans Mnat (menage a
trois) tfiih subunitprotein 1 protein.
Length = 310
Score = 30.7 bits (66), Expect = 0.80
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 476 DRSEFWRRKMRTVHNILDVDKDGLISFNDFVLYAERFK 589
D+ F RRK+R ++N+ D + L F D Y ERF+
Sbjct: 67 DKETFLRRKLRKIYNLKQDDFENLREFGD---YQERFE 101
>Z74043-8|CAA98538.1| 368|Caenorhabditis elegans Hypothetical
protein T19B10.6 protein.
Length = 368
Score = 29.9 bits (64), Expect = 1.4
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = -3
Query: 539 PCLHPGCCGRFASYDARILNDQIPCIRCRSPNRILNQILVSCDRFRGGRGVCCSIA*G-P 363
PC P F +DAR + C + R+ + RGGRG CSI P
Sbjct: 16 PC--PDIHALFIQFDARFFGGSLACCEVKWSPRMYACAGICSYEIRGGRGGLCSIRLSKP 73
Query: 362 WRLVRPAREI 333
+RP ++
Sbjct: 74 LLTLRPRSDL 83
>Z49207-3|CAA89071.1| 927|Caenorhabditis elegans Hypothetical
protein R07E3.6 protein.
Length = 927
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 348 PNEPPRPSGDATANTTAAPKPIA 416
P PP P+ ATA APKP+A
Sbjct: 847 PAPPPPPATQATAAPVTAPKPVA 869
>Z37983-5|CAA86059.2| 405|Caenorhabditis elegans Hypothetical
protein B0393.6 protein.
Length = 405
Score = 27.9 bits (59), Expect = 5.7
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +1
Query: 220 SRFLCYQCSKSSNVNPHKTSMQWCGLLPEGASAAGDARISRAGRTSRQGPQAMLQQTPRP 399
SR++CY SKS NV+ ++ LP A SR+ T ++ T P
Sbjct: 248 SRYICYDASKSDNVSMDSVFVESPHSLPTNV-APRIPPSSRSSFTQHSNDSGVVLST--P 304
Query: 400 PRNRSQET 423
P + S +T
Sbjct: 305 PTSSSAKT 312
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 348 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 524
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 348 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 524
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 348 PNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTPNARDLIVQNSGVVRCEPSTTS 524
P PP P + NT + + G ++ + + TP+P +S PST+S
Sbjct: 188 PPPPPPPPQNPRGNTDFSALSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSS 246
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 342 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 461
S+P+ P SG ++ +T AAP P E+ P R P P
Sbjct: 538 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 577
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 342 SWPNEPPRPSGDATANTTAAPKPIAGNENLIQNPIRTPTP 461
S+P+ P SG ++ +T AAP P E+ P R P P
Sbjct: 364 SFPSSAPIGSGASSYSTPAAPPPPTRVESHGLAPARPPPP 403
>AF016449-3|AAG23997.2| 337|Caenorhabditis elegans Serpentine
receptor, class t protein15 protein.
Length = 337
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 163 HFVLYNFLLAQLIDNLYSCSKLFKYHLSSRRRVASGTIWCV 41
+F+L NF QL + Y C YH+ + TI+C+
Sbjct: 22 YFILNNF---QLNQDWYVCPNNVSYHIGVEHKFWGATIFCM 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,070,354
Number of Sequences: 27780
Number of extensions: 266467
Number of successful extensions: 1010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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