Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P16
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.55 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.55 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.8  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   9.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 482 NDQIPCIRCRSPNRILNQILVS 417
           +DQI   RCR+ +R+  Q++VS
Sbjct: 201 SDQIHGYRCRTMHRLTRQVVVS 222


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 482 NDQIPCIRCRSPNRILNQILVS 417
           +DQI   RCR+ +R+  Q++VS
Sbjct: 201 SDQIHGYRCRTMHRLTRQVVVS 222


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 348 PNEPPRPSGDATANTTAAPKPIAGNENLIQ 437
           PN  P P+    + TT   +   G++ L+Q
Sbjct: 741 PNASPSPAEQCASTTTITARSPQGSQGLLQ 770


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 471 DLIVQNSGVVRCEPSTT 521
           + IV NSG + C P TT
Sbjct: 138 ECIVFNSGTILCVPFTT 154


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 216 VQPFSVLPVLQIK*R*STQ 272
           V PF+VLP+L++  R +T+
Sbjct: 182 VTPFTVLPLLKVWGRYTTE 200


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 216 VQPFSVLPVLQIK*R*STQ 272
           V PF+VLP+L++  R +T+
Sbjct: 182 VTPFTVLPLLKVWGRYTTE 200


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 551 RSARPCLHPGCCGRFAS 501
           R A   + P CCG+++S
Sbjct: 356 REAFKLMLPNCCGKWSS 372


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,751
Number of Sequences: 438
Number of extensions: 3345
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)