Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P15
         (526 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    27   1.3  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy...    27   1.7  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    26   3.0  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   6.9  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   9.1  

>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 313 ILIITSNKMIEDFLHIHCKVGVLR 384
           +LII S K+ E  +H HC V  +R
Sbjct: 135 LLIIGSGKVAEKLIHAHCSVRPIR 158


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 95  FKYFYHLI*LTINYNYKIN 39
           F  F+HL+ LT NY+Y IN
Sbjct: 145 FGLFHHLMFLTTNYSYTIN 163


>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 501 YGHGGGEYIICYKHIYHNTIIQG 433
           YG GG EY+   +H Y  T+I G
Sbjct: 350 YGRGGEEYLFFTQHGYVPTVIPG 372


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 128 RVYNLFLIYNNFKY-FYHLI 72
           RV NLFL Y  F Y F HL+
Sbjct: 209 RVINLFLFYEKFSYLFTHLL 228


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 152 NFISSTLYRVYNLF--LIYNNFKYFYHLI*LTINYNYKINKYRI 27
           N +++T Y ++      +Y  F+YFY++  L ++ +  I   +I
Sbjct: 92  NAVTNTKYDLFTFLPKCLYEQFRYFYNMYFLLVSLSQLIPPLKI 135


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 471 CYKHIYHNTIIQGGNRGLRLYRIKTA 394
           C+  IY N+ I+G  RGL +  +K A
Sbjct: 233 CFLSIYRNSGIKGLYRGLSVSMLKVA 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,084
Number of Sequences: 5004
Number of extensions: 35648
Number of successful extensions: 78
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)