Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P15
         (526 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT006669-1|AAP35315.1|  185|Homo sapiens signal sequence recepto...    30   4.3  
BC017203-1|AAH17203.1|  185|Homo sapiens signal sequence recepto...    30   4.3  
AF110647-1|AAD48587.1|  185|Homo sapiens translocon-associated p...    30   4.3  
AF087907-1|AAP97205.1|  185|Homo sapiens SSR gamma protein.            30   4.3  

>BT006669-1|AAP35315.1|  185|Homo sapiens signal sequence receptor,
           gamma (translocon-associated protein gamma) protein.
          Length = 185

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 304 LWVK*NMADNSHGLF*MFILKLLYFIYLVLCLFFILTGHNNTV 176
           LW K  +AD     F +F    L+ + +++  FFIL   N TV
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164


>BC017203-1|AAH17203.1|  185|Homo sapiens signal sequence receptor,
           gamma (translocon-associated protein gamma) protein.
          Length = 185

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 304 LWVK*NMADNSHGLF*MFILKLLYFIYLVLCLFFILTGHNNTV 176
           LW K  +AD     F +F    L+ + +++  FFIL   N TV
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164


>AF110647-1|AAD48587.1|  185|Homo sapiens translocon-associated
           protein gamma subunit protein.
          Length = 185

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 304 LWVK*NMADNSHGLF*MFILKLLYFIYLVLCLFFILTGHNNTV 176
           LW K  +AD     F +F    L+ + +++  FFIL   N TV
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164


>AF087907-1|AAP97205.1|  185|Homo sapiens SSR gamma protein.
          Length = 185

 Score = 30.3 bits (65), Expect = 4.3
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -1

Query: 304 LWVK*NMADNSHGLF*MFILKLLYFIYLVLCLFFILTGHNNTV 176
           LW K  +AD     F +F    L+ + +++  FFIL   N TV
Sbjct: 122 LWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,157,735
Number of Sequences: 237096
Number of extensions: 1089894
Number of successful extensions: 1509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1509
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5046825278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)