Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P11
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    29   0.57 
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    28   1.3  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   2.3  
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar...    26   5.3  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    26   5.3  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   9.3  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   9.3  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    25   9.3  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   9.3  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 427 LVFFPLSGVTISVSMRPAPMIVDRKPAWKLV*MSTYTPAVADAQVIIN 284
           LVF   S   I  ++RP+ ++VD K  WKL   S ++ +V  A+   N
Sbjct: 161 LVFLHGSAKVIHYNIRPSSVVVDAKGDWKLCGFS-FSQSVESARYEFN 207


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/72 (22%), Positives = 33/72 (45%)
 Frame = +3

Query: 198 TPNIQSFINGFQNRLEPPVRQHLKNVYGTLMMTCASATAGVYVDIYTSFQAGFLSTIIGA 377
           T +I+SF        E   + ++ N+ G + ++   A   V V++ T     +   I+G 
Sbjct: 730 TIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKSDPYARVIVGN 789

Query: 378 GLMLTLIVTPDN 413
            ++   + TP+N
Sbjct: 790 SVVARTVYTPNN 801


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 439 PSRRLVFFPLSGVTISVSMRPAP 371
           PSRR+V+ P S  +  +SM P P
Sbjct: 537 PSRRIVYKPPSSPSTPISMNPRP 559


>SPAC8C9.10c |||ribosome biogenesis protein
           Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 348 PGSLYRCQHTRRLWRMRKSSL 286
           P  LY  +HT   W+ +KS+L
Sbjct: 23  PAKLYYREHTANQWKQKKSTL 43


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 533 STWYYIGVRVLLYCCY 580
           ST Y  G+ VLL CCY
Sbjct: 308 STQYTTGIYVLLLCCY 323


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/65 (23%), Positives = 26/65 (40%)
 Frame = +2

Query: 140 SWSKEITLFQYQVVKFCYHDSQHTIFHKWFPESSGTTSASTLEKCLWYINDDLRIRHSRR 319
           +WSK        V+   Y++    I   + PE    +S++  E   +Y    +   H R 
Sbjct: 380 NWSKFTATAALGVIHRGYYNQAMNILRPYLPEEDAPSSSTYSEGGAFYAMGLIHANHGRG 439

Query: 320 VC*HL 334
           V  +L
Sbjct: 440 VTEYL 444


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 318 VYVDIYTS-FQAGFLSTIIGAGLMLTLIVTPDNGKNTNLRLGYLLGFGLISGM 473
           +++D+ +  F A  +ST +   +M++L V  D G N    L   +  G ISG+
Sbjct: 78  LWIDVSSIVFAASAISTFLQMAMMVSLGVICDYGNNRRYILFSCVIIGSISGI 130


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 441 YLLGFGLISGMSMGPLMEYVSVVNPSIIFTALLGTTLVFVCF 566
           +L GF  I   S G +  Y  ++N + +   ++ T ++FV F
Sbjct: 372 HLFGFLSIMNYSTGAVKAYGYIINLAGVSAFIVWTAIIFVHF 413


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/57 (22%), Positives = 29/57 (50%)
 Frame = -2

Query: 613 PRNNQLPRSANIAAIEKHTNTNVVPSRAVKIMDGLTTLTYSIKGPILIPDIKPNPRR 443
           PR++ +P    +  + ++  +++   R ++  D    +  +I+   L  DIKPNP +
Sbjct: 293 PRSSTIPTQRTLERLREN-RSSIFSFRTLR-RDDDECVAQTIENSALFSDIKPNPTK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,221
Number of Sequences: 5004
Number of extensions: 65364
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)