Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P11
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0195 + 1327071-1327187,1328060-1328203,1328340-1328431,132... 77 1e-14
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 30 1.8
01_06_0155 - 27057150-27057425 29 2.4
01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041 29 2.4
09_02_0076 - 3959572-3960279 28 7.3
07_03_0194 + 14979995-14980222 28 7.3
02_01_0356 + 2563773-2563898,2564031-2564131,2564375-2564498,256... 28 7.3
11_01_0046 + 355692-356354 27 9.7
08_02_1449 - 27174451-27178005 27 9.7
05_05_0210 - 23285241-23285338,23286297-23286447,23286660-232867... 27 9.7
02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808 27 9.7
>02_01_0195 +
1327071-1327187,1328060-1328203,1328340-1328431,
1329393-1329579,1329676-1329831,1329959-1330012
Length = 249
Score = 77.0 bits (181), Expect = 1e-14
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Frame = +3
Query: 237 RLEPPVRQHLKNVYGTLMMTCASATAGVYVDIYTSFQAGFLSTIIGA-GLMLTLIVTPDN 413
++ P V+ HLK VY TL + A++ G Y ++ + G + T++G G + L P
Sbjct: 28 QISPAVQSHLKLVYLTLCVALAASAVGAY--LHVALNIGGMLTMLGCVGSIAWLFSVPVF 85
Query: 414 GKNTNLRLGYLLGFGLISGMSMGPLMEYVSVVNPSIIFTALLGTTLVFVCFSIAAILADR 593
+ R G LL L+ G S+GPL++ + SI+ TA +GT + F CF+ AAI+A R
Sbjct: 86 EERK--RFGILLAAALLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKR 143
Query: 594 GSWLFLG 614
+L+LG
Sbjct: 144 REYLYLG 150
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +3
Query: 348 AGFLSTIIGAGLMLTLIVTPD-NGKNTNLRLGYLLGFGLISGMSMGPLMEYVSVVNPSII 524
AG LS++ AG L + + T+ +G ++GFG++ G ++ V+ S +
Sbjct: 222 AGLLSSLAAAGTWLQVASSYGWPVSTTHCIVGAMVGFGIVFGGVNAVFWSSLARVSSSWV 281
Query: 525 FTALLGTTLVFVCF 566
+ L+G + F+ +
Sbjct: 282 ISPLMGAAVSFIVY 295
>01_06_0155 - 27057150-27057425
Length = 91
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 143 WSKEITLFQYQVVKFCYHDSQHTIFHKWFPESSGTTSASTLEKCLWYINDDLRIRHSRRV 322
WSK+ + + + Y + +FHK GT +A + + + DDL++ +RRV
Sbjct: 21 WSKKENKLFEEALAY-YGEGAPDLFHKVSRAMGGTKTADEVRRHYEILEDDLKLIEARRV 79
>01_02_0005 - 10112657-10113745,10113903-10114066,10116465-10117041
Length = 609
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = -1
Query: 215 RLYVGSHDNKILRLDTETKLFLY 147
R G H NKI +LD+ET LFLY
Sbjct: 189 RFVAGKHGNKI-QLDSETHLFLY 210
>09_02_0076 - 3959572-3960279
Length = 235
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 210 QSFINGFQNRLEPPVRQHLKNVYGTLMMTCAS 305
Q F N FQ+R++ VR L N G L+ T ++
Sbjct: 154 QDFFNNFQDRIDYAVRHALINQSGVLVNTLSN 185
>07_03_0194 + 14979995-14980222
Length = 75
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +2
Query: 143 WSKEITLFQYQVVKFCYHDSQHTIFHKWFPESSGTTSASTLEKCLWYINDDLRIRHSRRV 322
WSKE Q + + Y + ++HK GT +A + + DD+++ +RRV
Sbjct: 5 WSKEENKLFEQAIAY-YGEGAPDLWHKVSRAMGGTKTADEVRLHFEILVDDIKLIEARRV 63
>02_01_0356 +
2563773-2563898,2564031-2564131,2564375-2564498,
2564592-2564651,2564762-2564829,2565520-2565562,
2566026-2566091,2566237-2566275,2566375-2566457,
2566654-2566765,2566840-2566923,2567026-2567184,
2567268-2567372,2567451-2567555,2567661-2567801,
2567920-2568024,2568111-2568335,2568762-2568875,
2568963-2569178,2569674-2569733,2569827-2569940,
2570047-2570132,2570211-2570319,2570408-2570586,
2570673-2570741,2570792-2571005
Length = 968
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 387 LTLIVTPDNGKNTNLRLGYLLGFGL-ISGMSMGPLMEYVSVV 509
L +++ N +TN+R+G +LG G+ +G L Y+S V
Sbjct: 474 LAILMEYINKDDTNIRIGAILGLGIAYAGSQKEELKSYLSTV 515
>11_01_0046 + 355692-356354
Length = 220
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +3
Query: 507 VNPSIIFTALLGTTLVFVCFSIAAILADRGSWLFL 611
VN + I L TL+ FS+AA+LA +W FL
Sbjct: 91 VNYAAIVALSLAATLLAHPFSLAALLALLAAWCFL 125
>08_02_1449 - 27174451-27178005
Length = 1184
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 295 LAHPPQPACMLTSIQASRLASC 360
L H P CML S+QA RL C
Sbjct: 609 LEHLPDSICMLYSLQALRLNGC 630
>05_05_0210 -
23285241-23285338,23286297-23286447,23286660-23286748,
23287108-23288394,23288460-23288516,23289446-23289644,
23290240-23290342,23291048-23291229,23291850-23291899,
23292192-23292360
Length = 794
Score = 27.5 bits (58), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 371 WSWSHAHANC 400
WSW+H H NC
Sbjct: 729 WSWTHGHGNC 738
>02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808
Length = 497
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 304 PPQPACMLTSIQASRLASCQLSLELVSCS 390
P + +C I L +C LSL L SCS
Sbjct: 341 PSKSSCFAPPISDEGLLTCHLSLTLASCS 369
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,439,604
Number of Sequences: 37544
Number of extensions: 409472
Number of successful extensions: 1009
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -