Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P11
         (644 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    29   2.8  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    29   2.8  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    29   2.8  
AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen prot...    29   2.8  
Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm rece...    27   8.6  
AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 405 PDNGKNTNLRLGYLLGFGLISGMSMGPLMEYVSVVNPS 518
           PD  +  ++R G  +GFG ++   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 405 PDNGKNTNLRLGYLLGFGLISGMSMGPLMEYVSVVNPS 518
           PD  +  ++R G  +GFG ++   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 405 PDNGKNTNLRLGYLLGFGLISGMSMGPLMEYVSVVNPS 518
           PD  +  ++R G  +GFG ++   +  ++++VS   PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166


>AF026211-4|AAB71295.1|  416|Caenorhabditis elegans Collagen protein
           40 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 363 TIIGAGLMLTLIVTPDNGKNTNLRLGYLLGFGLISGMSMG 482
           TI   GL+L+L +  D G   ++ L    GFG+ SG+ +G
Sbjct: 318 TIPSLGLVLSLGLGSDLGLGLSVGLDLAFGFGIGSGLGLG 357


>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 523 FLLLYLVLHWCSCASLLLLYWLTVAA 600
           ++LL ++L WC C +L L+ W+ V A
Sbjct: 391 YILLLVLLIWCFCIALCLI-WMYVCA 415


>U40414-5|AAA81408.2|  339|Caenorhabditis elegans Hypothetical
           protein F53B3.5 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +3

Query: 159 LCFSIKS*NFVIMTPNIQSFINGFQNRLEPPVRQHLKNVYG 281
           +CF++ + N+V +  N +  IN F+   EP +   L+N +G
Sbjct: 38  VCFAVTTDNWVEVQVNRREIINSFKR--EPELSLRLQNAFG 76


>AF125954-4|AAD14710.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 119 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 538 LVLHWCSCASLLLLY 582
           LV+HW  C S+L+LY
Sbjct: 191 LVIHWLQCFSILILY 205


>AC006769-5|AAF60577.2|  339|Caenorhabditis elegans Hypothetical
           protein Y45G12C.10 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 538 LVLHWCSCASLLLLY 582
           LV+HW  C S+L+LY
Sbjct: 193 LVIHWLQCFSILILY 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,488
Number of Sequences: 27780
Number of extensions: 362373
Number of successful extensions: 967
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)