Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P10
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 187 1e-48
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 44 2e-05
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 38 0.001
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 29 0.46
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 0.46
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 29 0.61
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 28 1.4
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.5
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 25 9.9
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 187 bits (456), Expect = 1e-48
Identities = 97/199 (48%), Positives = 128/199 (64%), Gaps = 8/199 (4%)
Frame = +1
Query: 91 SRRIGSVIRTIGASRQKHT---LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAA 261
S+ + IR + +R HT LP LP+ Y+ALEP +S IM LHH KHH TYVNNLNAA
Sbjct: 6 SKNSVAAIRNVSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAA 65
Query: 262 EEKLTQAQAKGDIDTIISLAPALKFNGGGHINHSIFWKNLSP---NGGKP--SDVLTKAV 426
+EKL A D++ ++L A+KFNGGGHINHS+FWK L+P GGKP S L KA+
Sbjct: 66 QEKL--ADPNLDLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAI 123
Query: 427 EKDFGSWENMKNQLATASVAVQGSGWGWLGFNKQMKKLQIATCQNQDPLQATTGLIPLFG 606
+GS E+ + ++ A ++QGSGW WL +K L+I T NQD + + P+ G
Sbjct: 124 TSKWGSLEDFQKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIG 179
Query: 607 IDVWEHAYYLQYKNVRADY 663
ID WEHAYY QY+N +A+Y
Sbjct: 180 IDAWEHAYYPQYENRKAEY 198
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 44.0 bits (99), Expect = 2e-05
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Frame = +1
Query: 352 INHSIFWKNL-SPNG-GKPSDV----LTKAVEKDFGSWENMKNQLATASVAVQGSGWGWL 513
+NH F+ L SP +D+ L ++ FGS+ +K+Q+ +V G GW WL
Sbjct: 76 VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135
Query: 514 GFNKQMKKLQIATCQNQD---------PLQATTGLIPLFGIDVWEHAYYLQY 642
++ + + N P T ++PL +++W++AY Y
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAYLDDY 187
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 37.9 bits (84), Expect = 0.001
Identities = 35/110 (31%), Positives = 50/110 (45%)
Frame = +1
Query: 133 RQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTII 312
RQKHT P P SA SR HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA-----SR-----HHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 313 SLAPALKFNGGGHINHSIFWKNLSPNGGKPSDVLTKAVEKDFGSWENMKN 462
S +P+ F G IN+ I KN S + P + + + K S++++KN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 29.5 bits (63), Expect = 0.46
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Frame = +1
Query: 142 HTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLA 321
HT+P L L P+ S + +++ +H V LN K T+ + + I A
Sbjct: 39 HTVPNL--SQRNLLPLFSPEALDIAWDQHQRQVVKELND-RVKGTELEDSSVFNIIFQTA 95
Query: 322 P------ALKFNGGGHINHSIFWKNLSPNGG--------KPSDVLTKAVEKDFGSWENMK 459
+F + NH F + + + + KAV ++FGS EN+
Sbjct: 96 ALPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLL 155
Query: 460 NQLATASVAVQGSGWGWLGFNKQMKKLQIATCQNQDP 570
+++ + G+ W W+ + + + T Q P
Sbjct: 156 SKIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSP 192
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 29.5 bits (63), Expect = 0.46
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -2
Query: 502 NLTLVLQLRLLPIGSSCSPMSQNLFQLLWS---THQKVCHRL 386
+L + +LL IGSS SP+ L L W Q +CH+L
Sbjct: 156 DLNAPIHAKLLTIGSSVSPIRFTLSSLNWKRLYQVQNICHKL 197
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 29.1 bits (62), Expect = 0.61
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 306 YHQSGTSTKIQWRWSHQPLYFL 371
+H + S KI+W WS+Q L+ L
Sbjct: 133 FHSNENSKKIEWTWSNQSLHTL 154
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.4
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +1
Query: 208 NLHHS--KHHATYVNNLNAAEEKLTQAQAKGDIDTIISLAPAL-KFNGGGHINHSIFWKN 378
NL H K+HA K+ QA K D +++A + ++N N+ +FW
Sbjct: 150 NLVHELEKYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWY 209
Query: 379 LSPNGG 396
+S +GG
Sbjct: 210 MSKSGG 215
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 556 QNQDPLQATTGLIPLFGIDVW 618
++ DPL+AT+ IPLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 315 TDDSINITFSLSLCQFLLGSI*IVNISSMMLGVMQI 208
TD+ + +T S LC FL S + + +++ V++I
Sbjct: 1338 TDEELQVTISFRLCAFLCFSDPFITSNYLVMIVLRI 1373
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +1
Query: 172 SALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDT 306
SAL+ V + ++HH +H T + + NA+ +++ + D+++
Sbjct: 91 SALKEVNTPAYQSMHHFEHLITPLPSTNASHSEVSLSAGVNDLNS 135
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,338
Number of Sequences: 5004
Number of extensions: 64684
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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