Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0007_P10
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 157 6e-39
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225... 100 1e-21
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86... 68 6e-12
01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,356... 31 1.1
06_01_0286 - 2094920-2097805 29 3.3
11_06_0658 - 25963719-25963931,25964016-25964468 28 7.7
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285... 28 7.7
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 28 7.7
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 157 bits (382), Expect = 6e-39
Identities = 90/202 (44%), Positives = 113/202 (55%), Gaps = 29/202 (14%)
Frame = +1
Query: 148 LPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKGDIDTIISLA-- 321
LP+LP++Y ALEP IS +IM LHH KHHATYV N N A E+L A AKGD I+ L
Sbjct: 33 LPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAVAKGDAPAIVHLQSA 92
Query: 322 ------------PALKFNGGGHINHSIFW------------KNLSPNGG--KPSDVLTKA 423
P F G ++ F + L GG P L A
Sbjct: 93 IKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGGEGGGDPPHAKLGWA 152
Query: 424 VEKDFGSWENMKNQLATASVAVQGSGWGWLGFNKQMKKLQIATCQNQDPLQAT-TGLIPL 600
+++DFGS+E + +++ A+QGSGW WL +K+ KKL + T NQDPL L+PL
Sbjct: 153 IDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAKKLSVETTANQDPLVTKGANLVPL 212
Query: 601 FGIDVWEHAYYLQYKNVRADYV 666
GIDVWEHAYYLQYKNVR DY+
Sbjct: 213 LGIDVWEHAYYLQYKNVRPDYL 234
>06_01_0314 +
2255908-2255979,2256354-2256512,2257021-2257209,
2257390-2257561,2257711-2257784,2257818-2257904,
2257975-2257998,2258100-2258225
Length = 300
Score = 100 bits (239), Expect = 1e-21
Identities = 63/197 (31%), Positives = 98/197 (49%), Gaps = 27/197 (13%)
Frame = +1
Query: 157 LPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQAQAKG-DIDTIISLA---- 321
L F ALEP IS+ + LH KH YV++LN ++L + G ++ +I A
Sbjct: 73 LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129
Query: 322 -PALKFNGGGHI-NHSIFWKNLSPNGG-KPSDVLTKAVEKDFGSWENMKNQLATASVAVQ 492
P ++N + NH FW+++ P GG P + + +EKDFGS+ N + + +++++
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189
Query: 493 GSGWGWLGFNKQMKKLQIATCQNQ-------------------DPLQATTGLIPLFGIDV 615
GSGW WL ++ +K + QN D + L PL +D+
Sbjct: 190 GSGWVWLVLKRKERKFSVVHTQNAISPLALGDINNSIPSINLCDDIPCPLLLQPLINLDL 249
Query: 616 WEHAYYLQYKNVRADYV 666
WEHAYYL YK+ R YV
Sbjct: 250 WEHAYYLDYKDDRRMYV 266
>06_01_0109 -
863806-864045,864448-864566,864680-864851,864914-865108,
865179-865388,865738-865926
Length = 374
Score = 68.1 bits (159), Expect = 6e-12
Identities = 43/126 (34%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Frame = +1
Query: 157 LPFEYSALEPVISRDIMNLHHSKHHATYVNNLNA----AE-EKLTQAQAKGDIDTIISLA 321
LP+ ALEP IS++ + H H +V LN +E E ++ Q A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188
Query: 322 PALKFNGGGHI-NHSIFWKNLSPNGG-KPSDVLTKAVEKDFGSWENMKNQLATASVAVQG 495
P F I NH +W+++ P GG KP + L K + +DFGS++ M Q A+ G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248
Query: 496 SGWGWL 513
SGW WL
Sbjct: 249 SGWVWL 254
>01_01_0484 - 3558941-3559303,3559439-3559560,3560596-3560743,
3560853-3561491,3562154-3562450,3562553-3563407,
3564363-3564545,3565041-3565118,3565762-3565974,
3566075-3566238,3566357-3566445,3566761-3566891,
3566980-3567148,3567255-3567327,3567525-3567606,
3567677-3567808,3568743-3568818,3568965-3569065,
3569446-3569636,3569738-3569912,3570604-3570854,
3571327-3571603,3572184-3572267,3572496-3573206
Length = 1867
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -1
Query: 551 VAICSFFICLLKPSQPQPDPCTATEAVANWFFMFSHEPKSFSTAL 417
+A+ +CL+ P +A++ + W F + HE + +STAL
Sbjct: 990 IALAIGALCLVVPPTAHLVISSASDFLLRWLFQYEHEHQQWSTAL 1034
>06_01_0286 - 2094920-2097805
Length = 961
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 103 GSVIRTIGASRQKHTLPELPFEYSALEPVISRDIMNLHHSKHHATYVNNLNAAEEKLTQA 282
G + TIG +L L ++ L +I + +LH H NNL+ + +Q
Sbjct: 796 GHIPETIG---NMSSLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQL 852
Query: 283 QAKGDIDTII 312
Q GD D I
Sbjct: 853 QTLGDEDPYI 862
>11_06_0658 - 25963719-25963931,25964016-25964468
Length = 221
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 506 PQPDPCTATEAVANWFFMFSHEPKSFSTALV 414
PQP PCT T AV ++ + S E S +++
Sbjct: 191 PQPQPCTPTGAVFPYYLVHSMEEDPTSCSVM 221
>05_05_0237 -
23526613-23527178,23527979-23528066,23528384-23528527,
23528674-23528790,23528860-23528970,23530911-23531062,
23531362-23531450,23531664-23531761
Length = 454
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 382 SPNGGKPSDVLTKAVEKDFGSWENMKNQLATASVAVQGSGW 504
SPN PS ++ FG W M+ + + S QG GW
Sbjct: 86 SPNQMHPSHIVPNFCGNAFGPWNGMRPERVSFS---QGPGW 123
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 542 CSF-FICLLKPSQPQPDPC 489
CS F+C+ KP+ P P PC
Sbjct: 205 CSHAFVCVCKPAPPPPPPC 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,149,246
Number of Sequences: 37544
Number of extensions: 441010
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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