Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P09
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.09 |tif6||translation initiation factor eIF6|Schizosacc...   259   2e-70
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    27   1.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.7  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    26   4.7  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   6.2  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    25   6.2  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPCC1919.09 |tif6||translation initiation factor
           eIF6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score =  259 bits (635), Expect = 2e-70
 Identities = 115/151 (76%), Positives = 137/151 (90%)
 Frame = +3

Query: 132 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELADTIPVIHASVGGCRIIG 311
           MA+R QFEN+NE+GVFS LTNSY LVA+GGSENFYSVFEAEL D +PV+H ++GG RIIG
Sbjct: 1   MALRAQFENSNEIGVFSNLTNSYALVALGGSENFYSVFEAELGDVVPVVHTTIGGTRIIG 60

Query: 312 RMTVANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPD 491
           R+T  N+ GLLVPSSTTD ELQH+RNSLPD VK+QRV+ERLSALGN++ACNDYVALVHPD
Sbjct: 61  RLTCGNRKGLLVPSSTTDNELQHLRNSLPDPVKIQRVDERLSALGNIVACNDYVALVHPD 120

Query: 492 LDKDTEEILADTLNVEVFRQTIAGNVLVGSY 584
           ++++TEEI+AD L+VEVFRQT+AGNVL GSY
Sbjct: 121 IERETEEIIADVLDVEVFRQTVAGNVLTGSY 151


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -1

Query: 544 NTSTFNVSARISSVSLSKSG*TRAT*SLHAMTLPKALRRSSTRCTFTASGKLFLICCNSV 365
           NTS+F  S+ ISS SLS S     T  + + + P  +  SS+  +FT S    L    S 
Sbjct: 224 NTSSFLPSSVISSASLSSSS-VLPTSIITSTSTPVTV-SSSSLSSFTPSYSTNLTTTGST 281

Query: 364 SVVEDGT--RSPFLFATVIRPIIRHPPTLACITGIVSASSASNTL 236
           +     T   SPF   + + P    P +++  T   S+SS + TL
Sbjct: 282 TTTGSATVSSSPFYSNSSVIP-TSVPSSVSSFTS--SSSSYTTTL 323


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 351 SSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHP 488
           SST  ++   I  S+     + +V +R S  G V +C+D+  LVHP
Sbjct: 145 SSTISSDACFIA-SIETKNPLAKVWQRTSPQGTVSSCDDFSYLVHP 189


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +1

Query: 343 WSHLQPQTQNYN 378
           WSHLQP   NYN
Sbjct: 838 WSHLQPLPYNYN 849


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +3

Query: 279 HASVGG---CRIIGRMTVANKN-GLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALG 446
           H S G      ++  ++++NKN  +L  S+T   +L+ I+N + D++ + R+E R     
Sbjct: 199 HRSTGNYAYVEVVHLLSLSNKNFRILALSATPGNKLEAIQNVI-DSLHISRIEIRTE--- 254

Query: 447 NVIACNDYV 473
           N I  + YV
Sbjct: 255 NSIDISQYV 263


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 567 HSPQLFAGTLQHLMCQ 520
           H P LFA  +QHL C+
Sbjct: 509 HLPPLFASLMQHLSCR 524


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 343 WSHLQPQTQNYNILEIVCP 399
           WS +QP+  + NIL+++CP
Sbjct: 176 WS-IQPKLDHPNILKVICP 193


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/31 (25%), Positives = 20/31 (64%)
 Frame = +3

Query: 255 LADTIPVIHASVGGCRIIGRMTVANKNGLLV 347
           + + +PV+H ++GG ++  +  V + NG ++
Sbjct: 427 VGEVVPVLHYTMGGVQVDTQSRVLSTNGNVI 457


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,648
Number of Sequences: 5004
Number of extensions: 48673
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)