Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P09
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1443 + 26575172-26575181,26575709-26575805,26575900-265759...   252   2e-67
01_01_1232 - 9966448-9966708,9966818-9966928,9967142-9967176,996...   141   3e-34
03_06_0098 + 31641760-31642386,31643173-31644114                       28   6.3  
03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334...    27   8.3  

>07_03_1443 +
           26575172-26575181,26575709-26575805,26575900-26575985,
           26576073-26576117,26576788-26576918,26577016-26577126,
           26577215-26577472
          Length = 245

 Score =  252 bits (616), Expect = 2e-67
 Identities = 116/151 (76%), Positives = 132/151 (87%)
 Frame = +3

Query: 132 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELADTIPVIHASVGGCRIIG 311
           MA R+QFENN EVGVFSKLTN+YCLVAIGGSENFYS FE+ELAD IPV+  S+GG RIIG
Sbjct: 1   MATRIQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFESELADVIPVVKTSIGGTRIIG 60

Query: 312 RMTVANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPD 491
           R+ V NKNGLL+P +TTD ELQH+RN LPD V VQR++ERLSALGN +ACND+VAL HPD
Sbjct: 61  RLCVGNKNGLLLPHTTTDQELQHLRNCLPDQVVVQRIDERLSALGNCVACNDHVALTHPD 120

Query: 492 LDKDTEEILADTLNVEVFRQTIAGNVLVGSY 584
           LDK TEE++AD L VEVFRQTIAGN+LVGSY
Sbjct: 121 LDKATEELIADVLGVEVFRQTIAGNILVGSY 151


>01_01_1232 -
           9966448-9966708,9966818-9966928,9967142-9967176,
           9967469-9967599,9967683-9967779,9967907-9967916
          Length = 214

 Score =  141 bits (342), Expect = 3e-34
 Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 12/147 (8%)
 Frame = +3

Query: 132 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELADTIPVIHASVGGCRIIG 311
           MA RV+FEN++E+GVF++LTN+YC++  GG+ENF+SVFE+ELAD +PV+  S+GG RIIG
Sbjct: 1   MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIG 60

Query: 312 RMTVANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEE-------RLSALGNVI----- 455
           RM V NKNGLL+P +TTD ELQH++NSLPD    + + +       R +  GN++     
Sbjct: 61  RMCVGNKNGLLLPHTTTDQELQHLKNSLPDQGTEEIISDVLGVEVFRQTIAGNILVGSFC 120

Query: 456 ACNDYVALVHPDLDKDTEEILADTLNV 536
           A ++   LVHP    + +  L+  L V
Sbjct: 121 AFSNKGGLVHPQTSVEDQAELSTLLEV 147



 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 22/30 (73%), Positives = 27/30 (90%)
 Frame = +3

Query: 495 DKDTEEILADTLNVEVFRQTIAGNVLVGSY 584
           D+ TEEI++D L VEVFRQTIAGN+LVGS+
Sbjct: 90  DQGTEEIISDVLGVEVFRQTIAGNILVGSF 119


>03_06_0098 + 31641760-31642386,31643173-31644114
          Length = 522

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/59 (22%), Positives = 34/59 (57%)
 Frame = +3

Query: 363 DTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDKDTEEILADTLNVE 539
           D + + I+ S+P  +++ +V E L     V++C +Y+  V P + ++ E +++   +++
Sbjct: 191 DAKQRLIKQSVPRVLRILKVAELLGFQACVLSCLEYLEAV-PWVGEEEENVVSSVQHLQ 248


>03_01_0432 +
           3339235-3339915,3340313-3340561,3341071-3341139,
           3341292-3341414,3341526-3341738
          Length = 444

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 340 SPFLFATVIRPIIRHPPTLACITGIVSASSASNTL*KFSEP 218
           +P L  TV R    HP +L  +T   ++SSA++ + +++ P
Sbjct: 113 APLLRRTVTRAWYDHPASLWRVTTTTTSSSATSVITEYASP 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,903
Number of Sequences: 37544
Number of extensions: 309221
Number of successful extensions: 697
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)