Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P09
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical pr...   217   4e-57
Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    28   5.6  
Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical ...    27   7.4  

>Z99709-5|CAB16860.1|  246|Caenorhabditis elegans Hypothetical
           protein C47B2.5 protein.
          Length = 246

 Score =  217 bits (531), Expect = 4e-57
 Identities = 96/151 (63%), Positives = 126/151 (83%)
 Frame = +3

Query: 132 MAVRVQFENNNEVGVFSKLTNSYCLVAIGGSENFYSVFEAELADTIPVIHASVGGCRIIG 311
           MA+RV +E +N+VGVF  LTNSYCLV +GG++NFYS+ EAEL+D IPV+H S+   RI+G
Sbjct: 1   MALRVDYEGSNDVGVFCTLTNSYCLVGVGGTQNFYSILEAELSDLIPVVHTSIASTRIVG 60

Query: 312 RMTVANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVIACNDYVALVHPD 491
           R+TV N++GLLVP++TTD ELQH+RNSLPD V ++RV+ERLSALGNVIACND+VA+VH +
Sbjct: 61  RLTVGNRHGLLVPNATTDQELQHLRNSLPDEVAIRRVDERLSALGNVIACNDHVAIVHAE 120

Query: 492 LDKDTEEILADTLNVEVFRQTIAGNVLVGSY 584
           +  +TE+ L + L VEVFR ++A N LVGSY
Sbjct: 121 ISAETEQALVEVLKVEVFRVSLAQNSLVGSY 151


>Z82084-2|CAB04976.1|  536|Caenorhabditis elegans Hypothetical
           protein ZK1053.2 protein.
          Length = 536

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = +3

Query: 333 NGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGN 449
           NG+LV S+ T++  Q IR  +PD VK      R+S +G+
Sbjct: 172 NGILVNSNLTNSNNQSIRMVIPDLVKAINT-SRVSLVGS 209


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 303 IIGRMTVANKNGLLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVI 455
           +IG +T  + N  L+P  +    LQH+ ++ PD   V  +   L  L  VI
Sbjct: 132 VIGHITQLSLNMCLLPLESDLFSLQHVESAQPDLFSVANMFVALQNLYGVI 182


>Z96047-5|CAB09415.1|  379|Caenorhabditis elegans Hypothetical
           protein DY3.6 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 76  TFHFIVKYQVLKLKNKTKSWRFAF 147
           TFHF  +YQ+ + K   KSWR AF
Sbjct: 299 TFHF-QEYQIKQQKTSGKSWRQAF 321


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 211 LLEVLKISTACLKRNWPTRSP*YMRASAD 297
           LL  +++  ACLK  W  R+P Y   S D
Sbjct: 208 LLRTMRLKRACLKLFWTARAPSYNIFSVD 236


>Z75541-3|CAA99855.1| 1425|Caenorhabditis elegans Hypothetical
           protein F52B5.3 protein.
          Length = 1425

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 339 LLVPSSTTDTELQHIRNSLPDAVKVQRVEERLSALGNVI 455
           ++ P S    ELQ +RNSLP +    +V + +S+   VI
Sbjct: 163 VIPPKSKCSKELQKVRNSLPASKYCDQVLKSISSCNVVI 201


>AL132859-4|CAB60492.1|  365|Caenorhabditis elegans Hypothetical
           protein Y39C12A.8 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 393 LPDAVKVQRVEERLSALGNVIACNDYVALVHPDLDKDTEEI 515
           +P + K    +E+   +GN+  C D+  +++ D     +EI
Sbjct: 3   IPKSAKSDYTKEQKDLVGNICQCKDFYKILNVDKKASPDEI 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,480,292
Number of Sequences: 27780
Number of extensions: 280817
Number of successful extensions: 659
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)