Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P08
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    32   0.046
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    31   0.14 
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.7  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.3  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   5.3  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    25   7.0  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    25   7.0  
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...    25   7.0  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   9.3  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    25   9.3  
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ...    25   9.3  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 32.3 bits (70), Expect = 0.046
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 338 VSIKLFRFIQHNIDQFIPTICKSLV 264
           +SI++F F+  NI   +PT CKSLV
Sbjct: 271 LSIRIFPFVAENIFNVLPTTCKSLV 295


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 162 VSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTN 281
           +SDL    K +SKN+H++   Y     +A R ++  R+ N
Sbjct: 217 LSDLDSIYKRESKNWHIVSQFYNMLELEAARQKLENRYLN 256


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +3

Query: 138 VVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQ 269
           VV+  I   S + DAAK  + N     DE+     + IR+ +N+
Sbjct: 57  VVQSQIAKASPIVDAAKQATVNVKSYYDEHAKPKVENIRYEVNE 100


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 118 GSVIISPFHSEFSSTESPN 62
           G+ I+ PFH  FSS   PN
Sbjct: 139 GTQIVGPFHPSFSSIVGPN 157


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -1

Query: 232  GSYSSTIXXXXXXXXXXXXXXXDTPSIYTSTT-ASGVLKGSVI-ISPFHSEFSSTESPNE 59
            G+ S T+                  S +T+T  A+G   GSVI +SP     SST    E
Sbjct: 1072 GTTSGTVEIVVPTAGTVTSTTGSGTSWFTTTVPATGTRSGSVIVVSPTAPACSSTPFA-E 1130

Query: 58   AEHISFNRLSKTL 20
              +++FN  SK +
Sbjct: 1131 CPNLNFNFHSKNV 1143


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = +3

Query: 9   EFGTRVLESLLKEICSASLGLSVEENSEWNGLMITDPFNTPEAVVEVYIDGVSDLADAAK 188
           +FG     SLL  + + +  +SV    +   ++I  PF +P    ++  DGV+ +A +  
Sbjct: 38  KFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSP----KITKDGVT-VARSVS 92

Query: 189 LKSK 200
           LK K
Sbjct: 93  LKDK 96


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = -1

Query: 247 ASNVSGSYSSTIXXXXXXXXXXXXXXXDTPSIYTSTTASGVLKGSVIISPFHSEFSSTES 68
           +S+ S + S+T                 +PS  +STT+   +  ++  S   S F+S  S
Sbjct: 112 SSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTISSSVSTSSFTSLSS 171

Query: 67  PNEAEHISFNRLSKTLVPNS 8
              +  +S    +  L P+S
Sbjct: 172 SGFSTVLSSTNTTSAL-PSS 190


>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 276 TNGGNKLINIMLNEPEKFNTYSNVF 350
           + GG++++N +L E +  N+  NVF
Sbjct: 613 SGGGDRVVNQLLTEMDGVNSKKNVF 637


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 222 EYEPDTFDAIRHRINQRFTNGGNKLINIMLNEPEKFNTYSNVFGY 356
           E E   FD +   +N +  N   KL     N   +F+ Y+N+  +
Sbjct: 440 EIEQPDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYANITSF 484


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 121 KGSVIISPFHSEFSSTESP 65
           KG+V+++  H EFS+  SP
Sbjct: 199 KGNVVLTGIHPEFSAEGSP 217


>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 258 RINQRFTNGGNKLINIMLNEPEKFNTYSNVFG 353
           +I  R   GG   IN+++++ + FN Y  +FG
Sbjct: 265 KIMSRSFKGG---INVVVSDLQMFNEYKRIFG 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,460
Number of Sequences: 5004
Number of extensions: 41323
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)