Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P08
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1632 + 28386956-28387042,28387120-28387185,28387354-283874...    29   2.3  
03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119...    28   5.4  
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250...    27   7.1  
06_01_1180 + 10141850-10141959,10142096-10142621                       27   7.1  
02_02_0268 + 8422024-8422623                                           27   7.1  

>08_02_1632 +
           28386956-28387042,28387120-28387185,28387354-28387449,
           28387534-28387609,28387884-28387972,28388041-28388133,
           28390389-28390526,28390709-28390814,28391521-28391627
          Length = 285

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 69  LSVEENSEWNGLMITDPFNTPEAVVEVYIDGVSDLAD 179
           L  + +S+ + L++ +PF+ P AV  + IDG  D  D
Sbjct: 76  LPAQSSSKLDKLLLPNPFDRPRAVFLLQIDGFHDKDD 112


>03_01_0150 +
           1191410-1191697,1191818-1191941,1192063-1192121,
           1192565-1192629,1192838-1192931,1193005-1193085,
           1193176-1193287,1193949-1194036,1194440-1194561,
           1194636-1194973,1195579-1195870,1195946-1196016,
           1197741-1197849,1198760-1198803,1198804-1198847,
           1200431-1200524
          Length = 674

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 335 SIKLFRFIQHNIDQFIPTICKSLVYPMSDGIKCI 234
           ++ L  F+Q  +  F+PTIC    YP  D + CI
Sbjct: 578 ALHLSNFVQVGLMLFLPTICP---YPRQDEMDCI 608


>06_03_1208 -
           28422941-28423139,28423854-28424434,28424705-28425078,
           28425235-28425339,28425902-28425970,28426084-28426156,
           28426395-28426478,28426616-28426648,28426731-28426790,
           28427535-28427627,28427851-28427970,28428804-28428886,
           28428887-28429007,28429114-28429164,28429245-28429333,
           28429429-28429561,28430220-28430354,28430581-28430952,
           28431679-28431796,28431883-28431998,28432131-28432442
          Length = 1106

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 495 SGLNNSFIHLLSDCLLVQLVQRETDSL 415
           SG NN+ IH+  DC  V +V R    L
Sbjct: 340 SGKNNTIIHIDMDCFFVSVVIRNKPEL 366


>06_01_1180 + 10141850-10141959,10142096-10142621
          Length = 211

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 183 AKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTN--GGNKLINIMLNEPE 323
           AK+    YH +   +  +   AI   +N   T+  GG K++N+ + E +
Sbjct: 43  AKVALLLYHAVAAHFSEEALKAINGEVNTLATDGGGGGKVLNLTIEEDD 91


>02_02_0268 + 8422024-8422623
          Length = 199

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -3

Query: 188 FCSICKVRYSIYIYFNYSF--WS 126
           F ++C V Y + +YFNY +  WS
Sbjct: 39  FTAVCLVLYGVILYFNYLYVRWS 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,429,152
Number of Sequences: 37544
Number of extensions: 229427
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)