Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P08
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical...    29   2.7  
AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine re...    28   4.8  
Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical pr...    27   6.3  
Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical p...    27   8.4  
CU457741-9|CAM36350.2|  252|Caenorhabditis elegans Hypothetical ...    27   8.4  
AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative pota...    27   8.4  

>AC025726-34|AAY43986.1|  308|Caenorhabditis elegans Hypothetical
           protein Y71G12B.30 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 10/50 (20%)
 Frame = -3

Query: 200 LRFQFCSICKVRYSIYIY--FNYSFWSVER--------VCDHKSIPFGIL 81
           +++ F + CK RYS+ +Y  F ++F+ +          +C H  IPFG+L
Sbjct: 144 MQYGFYNECKRRYSVTLYETFQWAFYCMPLCAIVGGRIMCMHGGIPFGLL 193


>AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine
           receptor, class xa protein5 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -3

Query: 212 QVIVLRFQFCSICKVRYSIY 153
           + I+L+F+FC +C + + +Y
Sbjct: 254 RTIILQFRFCIVCSINFLVY 273


>Z29116-4|CAA82370.2|  206|Caenorhabditis elegans Hypothetical
           protein ZK507.4 protein.
          Length = 206

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -3

Query: 176 CKVRYSIYIYFNYSFWSVERVCDHKSI 96
           C   +  Y+Y+    W+ E++ +H+SI
Sbjct: 45  CATFHENYVYYCRGIWTAEKLLEHRSI 71


>Z78198-10|CAB01568.1|  569|Caenorhabditis elegans Hypothetical
           protein F55C5.3a protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 114 DPFNTPEAVVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTNGGNK 293
           DP     ++VE   +GV  L  +  L+ +   L VDE++      ++ RI Q + +  +K
Sbjct: 463 DPHVATMSIVEDEEEGVKRLIQSQSLEDRIIFLFVDEHKK---SMLKERITQTYPSKADK 519

Query: 294 LI 299
            +
Sbjct: 520 YV 521


>CU457741-9|CAM36350.2|  252|Caenorhabditis elegans Hypothetical
           protein C42C1.9 protein.
          Length = 252

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 201 NYHLIVDEYEPDTFDAIRHRINQRFTN-GGNKLINIMLNEPEKFNTYSNVFGYIPVP 368
           +Y  I ++Y+  T+  +R + + +  N   + +I   LN  +   TY + +G  P+P
Sbjct: 55  DYDQISEDYDFVTYALLREKRSSKNNNMKTSHVITSTLNTEKSLETYLDEYGKFPLP 111


>AF083654-1|AAC32865.1|  569|Caenorhabditis elegans putative
           potassium channel subunitn2P24 protein.
          Length = 569

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 114 DPFNTPEAVVEVYIDGVSDLADAAKLKSKNYHLIVDEYEPDTFDAIRHRINQRFTNGGNK 293
           DP     ++VE   +GV  L  +  L+ +   L VDE++      ++ RI Q + +  +K
Sbjct: 463 DPHVATMSIVEDEEEGVKRLIQSQSLEDRIIFLFVDEHKK---SMLKERITQTYPSKADK 519

Query: 294 LI 299
            +
Sbjct: 520 YV 521


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,220,293
Number of Sequences: 27780
Number of extensions: 221586
Number of successful extensions: 677
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)