Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0007_P07
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   0.36 
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.4  
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    25   4.4  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    25   5.8  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    24   7.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    24   7.7  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 276 GNNDAVSESRGDSAKACRTRASGAIPPSAGYAP 178
           G   A+S   G+  K+     SGA  P AG+ P
Sbjct: 375 GGGSAISNGNGEPQKSIEFSESGAASPQAGHPP 407


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 253 FTDCVIISCTQLLRLVQFSLCYYVVTH 333
           F+D  ++   Q+L LV F L  YV+++
Sbjct: 132 FSDVALMGLDQILNLVSFGLSAYVISY 158


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 220 GTARLCRISSRFTDCVIISCTQLL 291
           G   +CR SS +TD +++ C  L+
Sbjct: 294 GAPAMCRKSSDYTDQLVLQCLLLM 317


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 322 VVTHTHIYILFITYILICILWTY 390
           ++  T   +L I Y+ IC++W Y
Sbjct: 87  ILLQTGFIVLSILYLPICLVWWY 109


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +1

Query: 61  LLVNNICILFYKYTYIIFIGVVDRIKCLLV 150
           ++VN+  +LFY   ++I + V+  + C+L+
Sbjct: 144 IVVNSHMLLFYLKPFVIALPVLIGVTCILL 173


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 171 HNLGVALHQQTLDPIYYTNKYYIRI 97
           HN G+A H  T + IY T    ++I
Sbjct: 500 HNSGIAHHNLTTECIYLTKSSCLKI 524


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,584,332
Number of Sequences: 5004
Number of extensions: 32057
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)